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GEO accession:
Sample GSM30733
Query DataSets for GSM30733
Status
Public on Sep 21, 2004
Title
ENCODE: TAF1-IMR90 Rep1
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using TAF1 antibody
Organism
Homo sapiens
Extracted molecule
genomic DNA
Channel 2
Source name
input DNA
Organism
Homo sapiens
Extracted molecule
genomic DNA
Description
Genome-wide location analysis of TAF1 binding at ENCODE regions in IMR90 cells. Replicate 1 of 3.
Submission date
Sep 16, 2004
Last update date
Nov 22, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE1778
ENCODE: GWLA of TAF1, RNA PolII binding in four cell lines
Data table header descriptions
ID_REF
VALUE
same as UNF_VALUE but with flagged values removed
SIGNIFICANCE
significance
P-VAL
p-value calculated using single array error model
F635_INT
F635 intensity with background intensity subtracted
F532_INT
F532 intensity with background intensity subtracted
F635_MEDIAN
F635 mdian intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
FLAG
flag from GenePro, 0 is useful
PRE_VALUE
enrichment value (F635/F532)
UNF_VALUE
log ratio (log2 of PRE_VALUE)
Data table
ID_REF
VALUE
SIGNIFICANCE
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
FLAG
PRE_VALUE
UNF_VALUE
1
0.7224663
0.2690
0.041720
1392
842.35
1473
1493
488
81
96
70
1228
1219
352
133
134
38
0
1.65
0.7224663
2
0.6959943
0.2512
0.053015
1588
980.23
1665
1720
698
77
93
69
1404
1412
593
130
134
38
0
1.62
0.6959943
3
0.6415463
0.2384
0.062505
2068
1329.19
2149
2130
724
81
96
86
1860
1787
613
133
136
49
0
1.56
0.6415463
4
0.6870613
0.2476
0.055542
1997
1243.68
2078
2049
866
81
98
87
1748
1649
731
132
136
49
0
1.61
0.6870613
5
0.7398483
0.2728
0.039628
1884
1127.36
1965
1953
660
81
96
69
1598
1586
564
133
134
37
0
1.67
0.7398483
6
0.6959943
0.2361
0.064392
1303
805.37
1381
1468
697
78
95
69
1184
1309
761
137
139
38
0
1.62
0.6959943
7
0.7398483
0.2693
0.041564
1003
601.24
1083
1114
429
80
96
71
914
920
269
132
134
36
0
1.67
0.7398483
8
-0.0145003
-0.0047
0.512143
1581
1594.18
1659
1634
516
78
94
68
2201
2110
482
130
132
35
0
0.99
-0.0145003
9
0.3334243
0.1309
0.199772
878
695.21
956
984
297
78
94
68
1032
1037
234
128
131
38
0
1.26
0.3334243
10
0.8399603
0.2600
0.047196
363
202.98
443
498
308
80
94
66
394
439
187
129
132
36
0
1.79
0.8399603
11
0.3673713
0.1407
0.182707
993
772.25
1074
1061
361
81
95
70
1133
1139
232
129
133
36
0
1.29
0.3673713
12
0.2509623
0.1020
0.255721
3030
2540.90
3115
3093
543
85
99
72
3429
3398
400
129
133
37
0
1.19
0.2509623
13
0.3219283
0.1258
0.209148
1970
1581.85
2055
2085
461
85
100
68
2184
2175
342
129
131
36
0
1.25
0.3219283
14
0.7224663
0.2601
0.047127
1589
962.52
1674
1752
735
85
101
71
1381
1414
541
130
132
36
0
1.65
0.7224663
15
0.8559903
0.2971
0.027980
1227
677.50
1308
1363
648
81
96
68
1014
1045
416
133
134
36
0
1.81
0.8559903
16
0.7907723
0.2921
0.030106
1727
1001.03
1808
1780
529
81
96
67
1433
1379
401
132
133
36
0
1.73
0.7907723
17
0.4114263
0.1581
0.154455
1589
1194.38
1669
1653
506
80
96
70
1683
1549
530
131
133
36
0
1.33
0.4114263
18
0.9781963
0.3423
0.013827
1013
513.42
1093
1100
446
80
97
71
801
824
273
133
135
37
0
1.97
0.9781963
19
0.8479973
0.3126
0.022150
2166
1202.86
2256
2191
653
90
180
527
1708
1642
478
145
433
1883
0
1.80
0.8479973
20
0.6040713
0.2294
0.069963
2180
1433.95
2262
2240
681
82
105
169
2003
1881
555
140
155
309
0
1.52
0.6040713
Total number of rows:
25392
Table truncated, full table size
2659 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM30733_cy3.tif.gz
54.1 Mb
(ftp)
(http)
TIFF
GSM30733_cy5.tif.gz
56.5 Mb
(ftp)
(http)
TIFF
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