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Status
Public on Dec 31, 2004
Title
baseline control 08
Sample type
RNA
Source name
basolateral amygdala
Organism
Rattus norvegicus Characteristics
male, 275-300g
Extracted molecule
total RNA
Label
fluorscent label via ENZO BioArray RNA Transcript Labeling Kit
Description
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought the expression changes specific to LTM at 6h following pain (a component of conditioning), following anesthesia with isoflurane (a general anesthetic and an effective amnestic agent), and following conditioning during isoflurane. For this also see GSE1779.
Data processing
raw data from Affymetrix
Submission date
Sep 17, 2004
Last update date
Mar 10, 2006
Contact name
Ira Rampil
E-mail(s)
ira.rampil@sunysb.edu Phone
631 444-2975
Organization name
University at Stony Brook
Lab
Rampil
Street address
City
Stony Brook
State/province
NY
ZIP/Postal code
11794-8480
Country
USA
Platform ID
GPL341 Series (1)
GSE1779 Effect of Isoflurane and LTM on basolateral amygdala
Data table header descriptions ID_REF
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-TrpnX-M_at
2.4
A
0.989683
AFFX-TrpnX-5_at
5.8
A
0.737173
AFFX-TrpnX-3_at
0.9
A
0.973889
AFFX-ThrX-M_at
13.8
A
0.5
AFFX-ThrX-5_at
6.4
A
0.883887
AFFX-ThrX-3_at
6.4
A
0.976071
AFFX-r2-P1-cre-5_at
10550
P
0.000244
AFFX-r2-P1-cre-3_at
13522.6
P
0.000244
AFFX-r2-Ec-bioD-5_at
1967.9
P
0.000244
AFFX-r2-Ec-bioD-3_at
2516.5
P
0.000244
AFFX-r2-Ec-bioC-5_at
582.7
P
0.000244
AFFX-r2-Ec-bioC-3_at
664.2
P
0.000244
AFFX-r2-Ec-bioB-M_at
429.5
P
0.000244
AFFX-r2-Ec-bioB-5_at
207
P
0.000244
AFFX-r2-Ec-bioB-3_at
241.6
P
0.000732
AFFX-r2-Bs-thr-M_s_at
19.6
A
0.601074
AFFX-r2-Bs-thr-5_s_at
11.4
A
0.601074
AFFX-r2-Bs-thr-3_s_at
10.8
A
0.870361
AFFX-r2-Bs-phe-M_at
6.7
A
0.850342
AFFX-r2-Bs-phe-5_at
11.9
A
0.466064
15923 428 Kbytes .Supplementary data files not provided
