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Status
Public on Dec 31, 2004
Title
baseline control 09
Sample type
RNA
Source name
basolateral amygdala
Organism
Rattus norvegicus Characteristics
male, 275-300g
Extracted molecule
total RNA
Label
fluorescent label via ENZO BioArray RNA Transcript Labeling Kit
Description
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought the expression changes specific to LTM at 6h following pain (a component of conditioning), following anesthesia with isoflurane (a general anesthetic and an effective amnestic agent), and following conditioning during isoflurane. For this also see GSE1779.
Data processing
raw data from Affymetrix
Submission date
Sep 17, 2004
Last update date
Mar 10, 2006
Contact name
Ira Rampil
E-mail(s)
ira.rampil@sunysb.edu Phone
631 444-2975
Organization name
University at Stony Brook
Lab
Rampil
Street address
City
Stony Brook
State/province
NY
ZIP/Postal code
11794-8480
Country
USA
Platform ID
GPL341 Series (1)
GSE1779 Effect of Isoflurane and LTM on basolateral amygdala
Data table header descriptions ID_REF
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-TrpnX-M_at
2.7
A
0.987453
AFFX-TrpnX-5_at
3.7
A
0.724854
AFFX-TrpnX-3_at
4.2
A
0.772364
AFFX-ThrX-M_at
6.7
A
0.749204
AFFX-ThrX-5_at
12.8
A
0.843268
AFFX-ThrX-3_at
8.2
A
0.916408
AFFX-r2-P1-cre-5_at
12193.2
P
0.000244
AFFX-r2-P1-cre-3_at
13276.9
P
0.000244
AFFX-r2-Ec-bioD-5_at
2147
P
0.000244
AFFX-r2-Ec-bioD-3_at
2543.7
P
0.000244
AFFX-r2-Ec-bioC-5_at
682.1
P
0.000244
AFFX-r2-Ec-bioC-3_at
827.7
P
0.000244
AFFX-r2-Ec-bioB-M_at
345.2
P
0.000732
AFFX-r2-Ec-bioB-5_at
194
P
0.000244
AFFX-r2-Ec-bioB-3_at
214.5
P
0.000244
AFFX-r2-Bs-thr-M_s_at
65.2
A
0.466064
AFFX-r2-Bs-thr-5_s_at
21.4
A
0.129639
AFFX-r2-Bs-thr-3_s_at
46.7
A
0.601074
AFFX-r2-Bs-phe-M_at
4.1
A
0.80542
AFFX-r2-Bs-phe-5_at
8.8
A
0.567627
15923 428 Kbytes .Supplementary data files not provided
