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Sample GSM31734 Query DataSets for GSM31734
Status Public on Oct 06, 2004
Title dt40sage
Sample type SAGE
Anchor NlaIII
Tag Count 63770
Tag Length 17
 
Source name ALV induced bursal cell line
Organism Gallus gallus
Extracted molecule total RNA
 
Description This library represents total RNA from DT40 Cre1 cells
This work was supported by the EU grants 'Genetics in a cell line' and 'Mechanisms of gene integration'
Library constructed in the laboratory of Jean-Marie Buerstedde, M.D.
submitted for publication with the title: Evaluation of the chicken transcriptome by SAGE of B cell and the DT40 cell line
Organ: bursa of Fabricius
Lab host: E. coli
Vector: pZErO-1
Vector type: plasmid
Library treatment: non-normalized
Keywords = chicken transcriptome SAGE Bursal cell DT40
Lot batch =
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Randolph B Caldwell
E-mail(s) randolph.caldwell@gsf.de
Phone (+49) 89 3187-2621
Fax (+49) 89 3187-4093
URL http://pheasant.gsf.de/DEPARTMENT/dt40.html
Organization name GSF-National Reseearch Center
Department Institute for Molecular Radiobiology
Lab Recombination
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL1477
Series (1)
GSE1817 Evaluation of the chicken transcriptome by SAGE of B cell and the DT40 cell line

Data table header descriptions
TAG Seventeen base SAGE tag;
COUNT Absolute tag count
TPM Tags per million, or (1000000*COUNT)/(Total tags)

Data table
TAG COUNT TPM
CCCAATCCACTGCACTG 2 31.362709
TTAGTTCTAGTTTATTT 21 329.30844
GGCTTACACACTGTACA 44 689.9796
GTTGATTGGGGTTGCTC 25 392.03387
TTATTTCTAATCTACAG 2 31.362709
AGATCGCAATGATAGCT 1 15.6813545
TATGTTTAAAGCATTTT 149 2336.522
CTGGAGATGAAAGCCAA 16 250.90167
TAGTGCTTGCAGACAAA 2 31.362709
GGAGCAGCTGCTGCTGT 4 62.725418
CTCCAGCAATGAACTTG 6 94.08813
CTGACCAAGATGGCAAC 6 94.08813
TACACAGTGCAAAATAA 47 737.0237
GCCCGGGCAAACGCTCG 248 3888.976
GGACCTCAATTTAAAGG 13 203.85762
GGTGCCTACAAGTACAT 145 2273.7964
TAAATGTCATCCAGTTC 3 47.044064
GTTTACTGATGTACAGA 1 15.6813545
GCTGGGATTTTCGACTG 4 62.725418
TTGGTTTCAAGCCAACC 162 2540.3794

Total number of rows: 21308

Table truncated, full table size 639 Kbytes.




Supplementary data files not provided

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