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GEO accession:
Sample GSM3243
Query DataSets for GSM3243
Status
Public on Dec 17, 2002
Title
KS-24
Sample type
SAGE
Anchor
NlaIII
Tag Count
46228
Tag Length
10
Source name
AIDS-KS lesion
Organism
Homo sapiens
Extracted molecule
total RNA
Description
SAGE library generated from a KS lesion from an AIDS-KS patient. Biopsy was taken 24 hours after treatment with adriamycine, bleomycine, and vincristine.
Submission date
Dec 17, 2002
Last update date
Nov 19, 2008
Contact name
Antoinette van der Kuyl
E-mail(s)
a.c.vanderkuyl@amc.uva.nl
Phone
31 20 5666778
Organization name
Academic Medical Centre, University of Amsterdam
Department
Human Retrovirology
Street address
City
Amsterdam
ZIP/Postal code
1105 AZ
Country
Netherlands
Platform ID
GPL4
Series (1)
GSE514
AIDS-related Kaposi's sarcoma
Data table header descriptions
TAG
10 nt SAGE tag sequence
COUNT
number of times tag is found in SAGE library
TPM
tags per million
Data table
TAG
COUNT
TPM
CCTGTAATCC
308
6662.63
CTCATAAGGA
281
6078.57
ATAATTCTTT
276
5970.41
CCACTGCACT
267
5775.72
AAAAAAAAAA
255
5516.14
GTGAAACCCC
227
4910.44
TACCATCAAT
222
4802.28
ATTCTCCAGT
193
4174.96
TGCACGTTTT
177
3828.85
TTCATACACC
173
3742.32
CACCTAATTG
165
3569.27
TAGGTTGTCT
153
3309.68
CCTAGCTGGA
152
3288.05
GGATTTGGCC
149
3223.15
TGTACCTGTA
146
3158.26
GTGAAACCCT
140
3028.47
TTGGTCCTCT
140
3028.47
AACTAAAAAA
130
2812.15
GAGGGAGTTT
124
2682.36
CTGGGTTAAT
121
2617.46
Total number of rows:
20807
Table truncated, full table size
387 Kbytes
.
Supplementary data files not provided
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