GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM3245
Query DataSets for GSM3245
Status
Public on Dec 17, 2002
Title
CD4 T-cells
Sample type
SAGE
Anchor
NlaIII
Tag Count
51131
Tag Length
10
Source name
CD4+ T-cells isolated from a single healthy donor
Organism
Homo sapiens
Extracted molecule
total RNA
Description
SAGE library generated from CD4+ T-cells isolated with the use of CD4-coated immunomagnetic beads from PBMC from a single healthy female donor. Half of the cells have been cultured, half of the cells were directly used for SAGE.
Submission date
Dec 17, 2002
Last update date
Nov 19, 2008
Contact name
Antoinette van der Kuyl
E-mail(s)
a.c.vanderkuyl@amc.uva.nl
Phone
31 20 5666778
Organization name
Academic Medical Centre, University of Amsterdam
Department
Human Retrovirology
Street address
City
Amsterdam
ZIP/Postal code
1105 AZ
Country
Netherlands
Platform ID
GPL4
Series (1)
GSE514
AIDS-related Kaposi's sarcoma
Data table header descriptions
TAG
10 nt SAGE tag sequence
COUNT
number of times tag is found in SAGE library
TPM
tags per million
Data table
TAG
COUNT
TPM
GTGACCACGG
1365
26696.13
CAAGCATCCC
796
15567.86
CCACTGCACT
589
11519.43
CTAAGACTTC
523
10228.63
CCTGTAATCC
393
7686.14
GTTGTGGTTA
344
6727.82
CTCATAAGGA
316
6180.20
GTGAAACCCC
237
4635.15
TGGCGTACGG
193
3774.62
CACCTAATTG
186
3637.71
ACGCAGGGAG
173
3383.47
TTGGTCCTCT
171
3344.35
GTGAAACCCT
168
3285.68
TTGGCCAGGC
163
3187.89
AACCCGGGAG
153
2992.31
CCCATCGTCC
146
2855.41
CACAAACGGT
130
2542.49
GTTCACATTA
122
2386.03
AAAACATTCT
122
2386.03
CCATTGCACT
121
2366.47
Total number of rows:
23666
Table truncated, full table size
440 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
