|
| Status |
Public on Nov 14, 2008 |
| Title |
HCC1143_SHUNT_A01 |
| Sample type |
genomic |
| |
|
| Source name |
human breast
|
| Organism |
Homo sapiens |
| Characteristics |
breast ductal adenocarcinoma
|
| Treatment protocol |
NA
|
| Growth protocol |
Cell lines were propagated in growth media recommended by the American Type Tissue Collection
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
|
| Label |
biotin
|
| Label protocol |
Affymetrix standard procedure
|
| |
|
| Hybridization protocol |
Affymetrix standard procedure
|
| Scan protocol |
Affymetrix standard procedure
|
| Description |
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_A01_228690
|
| Data processing |
Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
|
| |
|
| Submission date |
Oct 27, 2008 |
| Last update date |
Oct 29, 2008 |
| Contact name |
Derek Chiang |
| E-mail(s) |
chiang@med.unc.edu
|
| Organization name |
University of North Carolina
|
| Department |
Department of Genetics
|
| Street address |
UNC Lineberger Cancer Center, 450 West Drive, CB #7295
|
| City |
Chapel Hill |
| State/province |
NC |
| ZIP/Postal code |
27599-7295 |
| Country |
USA |
| |
|
| Platform ID |
GPL6801 |
| Series (2) |
| GSE13372 |
High-resolution mapping of copy-number alterations with massively parallel sequencing |
| GSE13373 |
Mapping of copy-number alterations with massively parallel sequencing |
|
