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Sample GSM34767

Query DataSets for GSM34767

Status

Public on Mar 15, 2005

Title

B6_Total_Testis_1

Sample type

SAGE

Anchor

NlaIII

Tag Count

24975

Tag Length

Source name

testis

Organism

Mus musculus

Extracted molecule

total RNA

Description

Testes from a single 9-weeks-old male of C57BL/6J mouse strain.
Seminiferous tubules were released from tunica and total RNA was isolated with TRIzol.
Library was constructed from total RNA using MicroSAGE protocol.
Linker tags and all 1-bp linker tag variations were removed.
Keywords = testis
Keywords = SAGE

Submission date

Nov 08, 2004

Last update date

Nov 19, 2008

Contact name

Petr Divina

E-mail(s)

divina@biomed.cas.cz

Phone

+420-296442260

URL

http://www.img.cas.cz/mmg/

Organization name

Institute of Molecular Genetics, Academy of Sciences

Department

Mammalian Molecular Genetics

Street address

Videnska 1083

City

Prague

ZIP/Postal code

142 20

Country

Czech Republic

Platform ID

GPL11

Series (1)

GSE1939

Adult mouse testis

Data table header descriptions
TAG	Tag sequence (10 bp),
COUNT	Raw tag count
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	261	10450.45
AAAAAAAAAC	2	80.08
AAAAAAAAAG	4	160.16
AAAAAAAAAT	1	40.04
AAAAAAAACA	2	80.08
AAAAAAAAGA	2	80.08
AAAAAAACAA	1	40.04
AAAAAAACTA	1	40.04
AAAAAAACTG	1	40.04
AAAAAAAGAA	6	240.24
AAAAAAATAA	1	40.04
AAAAAAATAG	1	40.04
AAAAAAATCA	1	40.04
AAAAAAGAAA	2	80.08
AAAAAAGAGG	1	40.04
AAAAAAGATT	1	40.04
AAAAAAGCTG	1	40.04
AAAAAATAAA	21	840.84
AAAAAATAAG	1	40.04
AAAAAATGAC	1	40.04

Total number of rows: 10516

Table truncated, full table size 197 Kbytes.

Supplementary data files not provided