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Sample GSM359289 Query DataSets for GSM359289
Status Public on Dec 01, 2009
Title H3K27me3 Yaswen1B RenLab ENCODE PCR tiling array replicate 1 llee_enc_H3K27me3_Yaswen1B_050108.gpr
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA from Yaswen1B cells using H3K27me3 antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA from Yaswen1B cells using H3K27me3 antibody
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy5
Label protocol Cy3 input Cy5 ChIP sample
 
Channel 2
Source name Input DNA from Yaswen1B cells
Organism Homo sapiens
Characteristics Input DNA from Yaswen1B cells
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy3
Label protocol Cy3 input Cy5 ChIP sample
 
 
Hybridization protocol GenePix
Scan protocol GenePix
Description ChIP-chip analyses were performed for various transcription factors and chromatin modifications in various cell types. Details to be described in publications.
Data processing raw data
 
Submission date Jan 09, 2009
Last update date Feb 19, 2009
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name University of California, San Diego
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE14436 P16INK4a mediated supperssion of telomerase in normal and malignant human breast cells

Data table header descriptions
ID_REF ID_REF
VALUE log2 ratio (F635/F532) with flagged values removed
STATISTICS statistics
PVAL p-value
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
UNF_VALUE log ratio (F635/F532)

Data table
ID_REF VALUE STATISTICS PVAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG UNF_VALUE
1 -0.220 1.07 3.961e-01 963.00 902.23 1027 1053 347 64 76 64 1405 1401 351 283 293 98 0 -0.220
2 -0.515 0.87 7.082e-01 749.00 860.41 814 837 365 65 78 67 1348 1354 358 278 282 96 0 -0.515
3 1.13 4.711e-01 10.00 8.85 62 73 62 64 75 62 298 303 95 287 293 99 -50 0
4 1.24 4.524e-01 10.00 8.04 62 71 62 63 74 61 270 278 99 276 282 96 -50 -2.585
5 -0.335 0.99 5.223e-01 983.00 997.11 1046 1046 431 63 74 63 1509 1520 524 269 273 95 0 -0.335
6 -0.034 1.21 2.200e-01 1627.00 1339.67 1691 1674 669 64 76 61 1934 1862 557 268 273 92 0 -0.034
7 -0.093 1.17 2.670e-01 1751.00 1501.30 1816 1825 626 65 79 66 2129 2172 525 262 269 96 0 -0.093
8 0.080 1.31 1.346e-01 1500.00 1141.05 1565 1585 477 65 78 66 1682 1692 334 263 268 93 0 0.080
9 -0.258 1.04 4.393e-01 1129.00 1085.57 1191 1280 576 62 72 61 1608 1614 554 258 267 93 0 -0.258
10 0.357 1.59 4.005e-02 1911.00 1199.75 1974 1986 818 63 75 62 1755 1794 729 263 268 92 0 0.357
11 -0.095 1.16 2.695e-01 1323.00 1136.23 1387 1363 491 64 75 64 1671 1686 395 258 264 95 0 -0.095
12 -0.574 0.84 7.613e-01 728.00 871.67 791 827 327 63 75 63 1342 1405 384 258 264 94 0 -0.574
13 0.220 1.45 7.887e-02 1080.00 745.42 1143 1106 514 63 75 64 1187 1152 392 260 266 94 0 0.220
14 -0.195 1.09 3.718e-01 1291.00 1188.49 1355 1326 537 64 78 67 1736 1649 596 258 264 91 0 -0.195
15 -0.044 1.21 2.260e-01 836.00 693.15 899 933 328 63 77 69 1127 1146 241 265 269 95 0 -0.044
16 0.397 1.64 2.646e-02 1798.00 1097.63 1863 1853 530 65 77 62 1630 1643 305 265 268 95 0 0.397
17 -0.139 1.13 3.105e-01 910.00 805.73 977 987 328 67 79 68 1260 1273 252 258 266 94 0 -0.139
18 -0.716 0.76 8.696e-01 1289.00 1703.13 1353 1338 432 64 74 61 2377 2457 501 259 263 93 0 -0.716
19 1.13 4.722e-01 10.00 8.85 65 76 59 66 77 62 280 286 102 269 274 94 -50 0
20 0.326 1.56 4.356e-02 3609.00 2315.88 3673 3410 1411 64 77 68 3148 2917 1022 268 273 95 0 0.326

Total number of rows: 25246

Table truncated, full table size 2384 Kbytes.




Supplementary file Size Download File type/resource
GSM359289.gpr.gz 2.5 Mb (ftp)(http) GPR
Processed data included within Sample table
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