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Sample GSM359295 Query DataSets for GSM359295
Status Public on Dec 01, 2009
Title H3K27me3 Yaswen3B RenLab ENCODE PCR tiling array replicate 1 llee_enc_H3K27me3_Yaswen3B_050108.gpr
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA from Yaswen3B cells using H3K27me3 antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA from Yaswen3B cells using H3K27me3 antibody
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy5
Label protocol Cy3 input Cy5 ChIP sample
 
Channel 2
Source name Input DNA from Yaswen3B cells
Organism Homo sapiens
Characteristics Input DNA from Yaswen3B cells
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy3
Label protocol Cy3 input Cy5 ChIP sample
 
 
Hybridization protocol GenePix
Scan protocol GenePix
Description ChIP-chip analyses were performed for various transcription factors and chromatin modifications in various cell types. Details to be described in publications.
Data processing raw data
 
Submission date Jan 09, 2009
Last update date Feb 19, 2009
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name University of California, San Diego
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE14436 P16INK4a mediated supperssion of telomerase in normal and malignant human breast cells

Data table header descriptions
ID_REF ID_REF
VALUE log2 ratio (F635/F532) with flagged values removed
STATISTICS statistics
PVAL p-value
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
UNF_VALUE log ratio (F635/F532)

Data table
ID_REF VALUE STATISTICS PVAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG UNF_VALUE
1 -0.092 1.11 3.138e-01 454.00 407.31 528 550 294 74 87 69 673 748 331 189 193 76 0 -0.092
2 -0.144 1.08 3.716e-01 380.00 353.45 455 479 256 75 90 71 603 601 255 183 189 77 0 -0.144
3 1.19 4.450e-01 10.00 8.42 71 87 67 75 91 73 180 187 75 185 192 78 -50 -0.322
4 1.19 4.721e-01 10.00 8.42 77 96 77 76 92 74 188 210 185 191 196 79 -50 0
5 -0.225 1.02 4.683e-01 687.00 675.77 766 789 344 79 97 75 991 1049 345 188 192 79 0 -0.225
6 -0.182 1.05 4.131e-01 1145.00 1093.18 1222 1296 674 77 93 74 1490 1365 575 191 194 77 0 -0.182
7 -0.156 1.07 3.747e-01 1554.00 1456.73 1633 1570 660 79 94 78 1918 1914 597 187 192 76 0 -0.156
8 -0.271 0.99 5.287e-01 921.00 934.97 998 1035 448 77 96 103 1302 1284 542 191 195 78 0 -0.271
9 -0.230 1.01 4.743e-01 1186.00 1170.60 1264 1290 540 78 97 77 1579 1594 446 188 192 78 0 -0.230
10 -0.035 1.16 2.340e-01 1501.00 1294.31 1578 1612 707 77 95 81 1731 1745 500 193 197 85 0 -0.035
11 -0.047 1.15 2.520e-01 635.00 552.06 711 734 310 76 93 82 849 882 317 193 199 178 0 -0.047
12 -0.517 0.83 7.943e-01 360.00 433.40 438 459 249 78 95 85 708 784 334 193 198 78 0 -0.517
13 0.138 1.31 9.330e-02 979.00 748.98 1061 1049 378 82 99 77 1079 1117 254 189 194 77 0 0.138
14 -0.522 0.83 8.259e-01 990.00 1196.69 1066 1040 433 76 92 72 1614 1567 414 192 197 80 0 -0.522
15 -0.018 1.17 2.157e-01 817.00 695.97 894 926 332 77 93 76 1021 1007 317 194 197 79 0 -0.018
16 0.142 1.31 9.021e-02 1658.00 1264.86 1733 1697 626 75 91 71 1698 1654 386 195 199 78 0 0.142
17 -0.240 1.01 4.876e-01 785.00 780.12 858 863 329 73 90 74 1124 1131 274 197 200 78 0 -0.240
18 -0.178 1.05 4.023e-01 1054.00 1003.13 1131 1168 430 77 94 75 1381 1359 320 189 194 77 0 -0.178
19 1.19 4.478e-01 10.00 8.42 75 90 71 76 91 74 189 197 79 196 204 81 -50 -2.807
20 0.503 1.68 7.669e-03 1107.00 657.25 1181 1182 491 74 88 70 979 975 300 198 204 83 0 0.503

Total number of rows: 25246

Table truncated, full table size 2367 Kbytes.




Supplementary file Size Download File type/resource
GSM359295.gpr.gz 2.5 Mb (ftp)(http) GPR
Processed data included within Sample table
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