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Sample GSM360101

Query DataSets for GSM360101

Status

Public on Jan 15, 2009

Title

heart_KO_rep1

Sample type

RNA

Source name

Heart, KO1

Organism

Mus musculus

Characteristics

Heart RNA

Biomaterial provider

Harlan

Extracted molecule

total RNA

Extraction protocol

Trizol extraction

Label

Biotin

Label protocol

Ambion MessageAmp II-biotin enhanced kit (manufacturer's recommendations)

Hybridization protocol

Performed according to the manufacturer's (Affymetrix) recommendations

Scan protocol

Performed according to the manufacturer's (Affymetrix) recommendations

Description

Heart, KO1

Data processing

Raw intensities from the CEL files were analyzed using Affymetrix Power Tool (APT, version 1.8.5) to generate robust multi-array average intensity in log2 scale for each probe set. The perfect match intensities for each probe set were corrected for background and quantile-normalized using a robust fit of linear models.

Submission date

Jan 13, 2009

Last update date

Jan 14, 2009

Contact name

Masaki Ieda

E-mail(s)

mieda@gladstone.ucsf.edu

Phone

415-734-2880

Organization name

Gladstone Institute

Street address

1650 Owens street,

City

San Francisco

State/province

ZIP/Postal code

94404

Country

USA

Platform ID

GPL6246

Series (2)

GSE14411	Gene expression in b1-integrin wild-type and knockout mouse heart
GSE14414	Gene expression in mouse heart

Data table header descriptions
ID_REF
VALUE	log2Intensity

Data table
ID_REF	VALUE
10473562	4.184
10385500	6.434
10593927	7.666
10457733	9.119
10476889	8.08
10438425	4.585
10442238	4.843
10539444	6.504
10424411	9.465
10565355	3.202
10362379	7.173
10461640	7.011
10398100	5.884
10517791	4.883
10578690	8.561
10442236	6.093
10399760	12.304
10418038	6.921
10578922	8.235
10442786	5.658

Total number of rows: 28767

Table truncated, full table size 420 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM360101.CEL.gz	4.3 Mb	(ftp)(http)	CEL
Processed data included within Sample table