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Sample GSM360102 Query DataSets for GSM360102
Status Public on Jan 15, 2009
Title heart_KO_rep2
Sample type RNA
 
Source name Heart, KO2
Organism Mus musculus
Characteristics Heart RNA
Biomaterial provider Harlan
Extracted molecule total RNA
Extraction protocol Trizol extraction
Label Biotin
Label protocol Ambion MessageAmp II-biotin enhanced kit (manufacturer's recommendations)
 
Hybridization protocol Performed according to the manufacturer's (Affymetrix) recommendations
Scan protocol Performed according to the manufacturer's (Affymetrix) recommendations
Description Heart, KO2
Data processing Raw intensities from the CEL files were analyzed using Affymetrix Power Tool (APT, version 1.8.5) to generate robust multi-array average intensity in log2 scale for each probe set. The perfect match intensities for each probe set were corrected for background and quantile-normalized using a robust fit of linear models.
 
Submission date Jan 13, 2009
Last update date Jan 14, 2009
Contact name Masaki Ieda
E-mail(s) mieda@gladstone.ucsf.edu
Phone 415-734-2880
Organization name Gladstone Institute
Street address 1650 Owens street,
City San Francisco
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL6246
Series (2)
GSE14411 Gene expression in b1-integrin wild-type and knockout mouse heart
GSE14414 Gene expression in mouse heart

Data table header descriptions
ID_REF
VALUE log2Intensity

Data table
ID_REF VALUE
10473562 4.136
10385500 5.917
10593927 7.772
10457733 9.042
10476889 8.407
10438425 4.704
10442238 5.494
10539444 6.577
10424411 9.65
10565355 3.235
10362379 7.41
10461640 6.97
10398100 5.564
10517791 5.134
10578690 8.408
10442236 6.548
10399760 12.294
10418038 6.852
10578922 7.99
10442786 5.634

Total number of rows: 28767

Table truncated, full table size 420 Kbytes.




Supplementary file Size Download File type/resource
GSM360102.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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