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Sample GSM361409 Query DataSets for GSM361409
Status Public on Jan 17, 2009
Title WholeCerebellum_P6_wt_rep2
Sample type SRA
 
Source name cerebellum
Organism Mus musculus
Characteristics Wild-type (C57BL/6), age day 6 (P6)
genotype: WT; Tissue: cerebellum; Age: P6
Growth protocol Standard mouse facility
Extracted molecule total RNA
Extraction protocol Total RNA extraction by Trizol
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description Barcode used in pool: 5MLG
Raw data file: CSHL_FC12772_4_Medullo_3.fastq
Data processing The reads were deconvoluted by barcode, collapsed to unique sequences, aligned to the genome and annotated. Read-counts for miRNA sequences were cubic-spline normalized then log-transformed. The R-project software (http://www.R-project.org), including Bioconductor were used for data analysis.
 
Submission date Jan 16, 2009
Last update date Mar 04, 2023
Contact name Fedor Karginov
E-mail(s) karginov@ucr.edu
Organization name UC Riverside
Department MCSB
Street address 900 University Ave
City Riverside
State/province California
ZIP/Postal code 92521
Country USA
 
Platform ID GPL9185
Series (1)
GSE14470 MicroRNA profiling in mouse medulloblastomas and normal cerebellar tissues
Relations
BioSample SAMN02195477

Data table header descriptions
SEQUENCE
COUNT Read-counts for miRNA sequences were cubic-spline normalized then log-transformed

Data table
SEQUENCE COUNT
mmu-let-7a (main) 3.005063802
mmu-let-7a (other) 0.040908908
mmu-let-7b (main) 3.277626639
mmu-let-7b (other) 0.336814548
mmu-let-7c (main) 3.801239009
mmu-let-7c (other) 0.040908908
mmu-let-7c$mmu-let-7a (main) 0.723002029
mmu-let-7c$mmu-let-7a (other) 0.040908908
mmu-let-7c$mmu-let-7a$mmu-let-7c$mmu-let-7a (main) 0.856212234
mmu-let-7d (main) 2.802228695
mmu-let-7d (other) 0.201147474
mmu-let-7e (main) 2.03036378
mmu-let-7e (other) 0.040908908
mmu-let-7f (main) 3.215394582
mmu-let-7f (other) 0.040908908
mmu-let-7g (main) 2.867332994
mmu-let-7g (other) 0.201147474
mmu-let-7i (main) 2.767359245
mmu-let-7i (other) 0.336814548
mmu-mir-1 (main) 0.336814548

Total number of rows: 528

Table truncated, full table size 16 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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