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Sample GSM365207 Query DataSets for GSM365207
Status Public on Jul 01, 2009
Title M034
Sample type RNA
 
Source name Whole blood from patient with septicemic melioidosis
Organism Homo sapiens
Characteristics Age: 40
Gender: F
Ethnicity: Not Hispanic or Latino
Race: Asian
Illness: Sepsis/Melioidosis
Treatment: Fortum, Bactrim, Ceftazidime, Ceftriaxone
Pathogen: B.pseudomallei
Extracted molecule total RNA
Extraction protocol Tempus Spin Isolation Kit
Label biotin
Label protocol Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion
 
Hybridization protocol HumanHT-12 Expression BeadChip
Scan protocol Illumina BeadScan Version 3.5.49.29917 (This information is in the .XML file)
Description The subject was infected with B.pseudomallei
Data processing The data were analysed using BeadStudio version 3.1.3.0 using the average chip normalization method.
 
Submission date Jan 28, 2009
Last update date May 29, 2009
Contact name Damien Chaussabel
E-mail(s) DChaussabel@benaroyaresearch.org
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (1)
GSE13015 Genomic Transcriptional Profiling Identifies a Blood Biomarker Signature for the Diagnosis of Septicemic Melioidosis

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -10.83263 0.9776021
ILMN_2055271 3.34256 0.2555995
ILMN_1736007 6.029097 0.140975
ILMN_2383229 -11.12731 0.9802371
ILMN_1806310 1.02536 0.3873518
ILMN_1779670 4.610123 0.198946
ILMN_2321282 8.260611 0.08959157
ILMN_1671474 6.037593 0.140975
ILMN_1772582 -1.31456 0.5507246
ILMN_1735698 7.839485 0.1001318
ILMN_1653355 22.55911 0.009222661
ILMN_1717783 -4.521131 0.7602108
ILMN_1705025 7.73922 0.1054018
ILMN_1814316 -5.400229 0.801054
ILMN_2359168 6.718882 0.1264822
ILMN_1731507 0.5946534 0.4202898
ILMN_1787689 0.5811822 0.4216074
ILMN_1745607 -4.727347 0.7681159
ILMN_2136495 1.474048 0.3596838
ILMN_1668111 -1.910504 0.5928854

Total number of rows: 48803

Table truncated, full table size 1489 Kbytes.




Supplementary file Size Download File type/resource
GSM365207.xls.gz 3.1 Mb (ftp)(http) XLS
Processed data included within Sample table

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