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Sample GSM3678 Query DataSets for GSM3678
Status Public on Jun 14, 2003
Title Th2 clone R2.4
Sample type SAGE
Anchor NlaIII
Tag Count 10799
Tag Length 10
 
Source name CD4+ Th2 clone H-Y specific (resting)
Organism Mus musculus
Extracted molecule total RNA
 
Description A CD4+ Th2 clone (R2.4) from a primed A1xRAG-1-/- TCR transgenic mouse specific for H-Y + H2Ek. mRNA was derived from resting T cells 7 days from last stimulation. cDNA was preamplified (SMART) before SAGE analysis.
Keywords = T cell, clone, Th2, CD4, graft rejection, SMART
 
Submission date Jan 15, 2003
Last update date Nov 19, 2008
Contact name Steve Cobbold
E-mail(s) stephen.cobbold@path.ox.ac.uk
Phone +44-(0)1865-275504
Fax +44-(0)1865-275501
URL http://www.molbiol.ox.ac.uk/pathology/tig/welcome.html
Organization name University of Oxford
Department Sir William Dunn School of Pathology
Lab Therapeutic Immunology Group
Street address South Parks Road
City Oxford
State/province Oxfordshire
ZIP/Postal code OX1 3RE
Country United Kingdom
 
Platform ID GPL11
Series (2)
GSE205 Mouse T helper cell clones
GSE1316 IL-10-conditioned dendritic cells elicit innate inflammatory gene products in response to danger signals

Data table header descriptions
TAG 10 base pair SAGE Tag
COUNT Absolute count of each Tag in library
TPM tags per million

Data table
TAG COUNT TPM
GTGGCTCACA 294 27224.74
TTTTCAAAAA 128 11852.95
AGTTGGAAAC 110 10186.13
AAGGCTTATT 69 6389.48
TTGGTGAAGG 69 6389.48
GCGGCGGATG 58 5370.87
GCCTCCAAGG 56 5185.67
AAGGTGGAAG 55 5093.06
CTAATATTTG 51 4722.66
GCTGTTTGCT 45 4167.05
AGGCAGACAG 42 3889.25
CCTTTAATCC 42 3889.25
TGGTTGCTGG 41 3796.65
GCTGCCCTCC 39 3611.45
AGAGCGAAGT 37 3426.24
AAAACAGTGG 35 3241.04
AGAGTGATTT 30 2778.04
AAGATCAAGA 27 2500.23
GAGCGTTTTG 27 2500.23
TATGCCTGTC 27 2500.23

Total number of rows: 6205

Table truncated, full table size 116 Kbytes.




Supplementary data files not provided
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