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Sample GSM374104 Query DataSets for GSM374104
Status Public on Dec 07, 2009
Title Sample 3 Prostate Tumor patient 2
Sample type RNA
 
Source name Prostate Tumor
Organism Homo sapiens
Characteristics tissue: Prostate
origin: Tumor
Biomaterial provider Ambion
Extracted molecule total RNA
Extraction protocol Total RNA was purchased from ABI (Ambion) as FirstChoice(R) Human Tumor/Normal Adjacent Tissue RNA.
Label Cy3
Label protocol miRNA Microarray System Protocol v.1.5. See Agilent Technologies website for miRNA labeling protocol.
 
Hybridization protocol miRNA Microarray System Protocol v.1.5. See Agilent Technologies website.
Scan protocol Scanned on an Agilent G2565AA Scanner
Description SAMPLE 3
Data processing GeneView files were generated using Agilent's Feature Extraction software version 9.5.3.1
 
Submission date Feb 25, 2009
Last update date Dec 07, 2009
Contact name Roy Navon
E-mail(s) rnavon@gmail.com
Organization name Agilent Technologies
Street address 94 Em Hamoshavot Road
City Petach Tikva
ZIP/Postal code 49527
Country Israel
 
Platform ID GPL8227
Series (1)
GSE14985 Novel Rank-Based Statistical Methods Reveal MicroRNAs with Differential Expression in Multiple Cancer Types

Data table header descriptions
ID_REF
VALUE The values in the matrix are based on the gTotalGeneSignal column in the GeneView files. For each miRNA, expression values below the noise level (represented by the gTotalGeneError column) were replaced by the noise level. All samples were then normalized to have an equal the same 75th percentile value.

Data table
ID_REF VALUE
DarkCorner
NC1_00000197
NC1_00000215
NC2_00079215
NC2_00092197
NC2_00106057
NC2_00122731
NegativeControl
SCorner3
dmr_285
dmr_3
dmr_308
dmr_316
dmr_31a
dmr_6
ebv-miR-BART1-3p 3.0823193
ebv-miR-BART1-5p 3.082841
ebv-miR-BART10 3.0855086
ebv-miR-BART10* 3.084426
ebv-miR-BART11-3p 3.0834596

Total number of rows: 821

Table truncated, full table size 18 Kbytes.




Supplementary file Size Download File type/resource
GSM374104_FE.txt.gz 1.8 Mb (ftp)(http) TXT
GSM374104_GeneView.txt.gz 9.3 Kb (ftp)(http) TXT
Processed data included within Sample table

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