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GEO accession:
Sample GSM37590
Query DataSets for GSM37590
Status
Public on Dec 16, 2004
Title
ENCODE: MeH3K4-IMR90 Rep1
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using MeH3K4 antibody
Organism
Homo sapiens
Extracted molecule
genomic DNA
Channel 2
Source name
input DNA
Organism
Homo sapiens
Extracted molecule
genomic DNA
Description
Genome-wide location analysis of dimethylated K4 histone 3 binding at ENCODE regions in IMR90 cells. Replicate 1 of 3. Array ID in the lab is ENC051.
Keywords = ENCODE, ChIP-on-Chip, dimethylated K4 histone 3
Submission date
Dec 14, 2004
Last update date
May 27, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE2072
ENCODE: Histone H3 acetylation and K4 methylation in IMR90 cells
Data table header descriptions
ID_REF
VALUE
log ratio (F635/F532)
STATISTICS
statistics
P-VAL
p-value calculated using single array error model
F635_INT
F635 intensity with background intensity subtracted (normalized)
F532_INT
F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN
F635 mdian intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
FLAG
flag from GenePro, 0 is useful
Data table
ID_REF
VALUE
STATISTICS
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
FLAG
1
0.2421342
0.090131
3.195703e-01
1198.5
1013.32
1329
1433
655
130
161
135
1425
1420
495
223
230
70
0
2
0.3620232
0.137205
2.376742e-01
2022.5
1573.65
2151
2216
851
128
159
131
2092
2055
722
227
237
171
0
3
0.2371488
0.091894
3.162983e-01
2190.5
1858.46
2340
2311
779
149
235
657
2448
2398
752
246
554
2964
0
4
0.3761970
0.144914
2.254521e-01
2280.5
1757.05
2423
2488
799
142
198
519
2323
2311
689
241
317
1080
0
5
0.2987287
0.091592
3.168584e-01
1904.5
1548.30
2045
2138
1170
140
623
3794
2074
2338
2254
239
1464
7219
0
6
0.4103834
0.023997
4.503240e-01
1107.5
833.31
1236
1693
2851
128
241
937
1225
3559
10939
236
464
2813
0
7
-0.1239762
-0.001120
5.023248e-01
212.5
231.57
355
2137
5959
142
554
2687
521
6392
15942
244
1667
8080
0
8
-0.4683695
-0.100409
6.992954e-01
1570.5
2172.86
1733
1897
2252
162
629
2566
2833
2993
4535
259
2058
7660
0
9
-0.0622217
-0.004924
5.102193e-01
1000.5
1044.59
1137
1484
1485
136
317
1374
1474
3457
8658
235
870
4171
0
10
0.7331652
0.259780
8.826911e-02
664.5
399.75
797
832
362
132
206
691
703
712
204
227
288
671
0
11
0.0857115
0.033647
4.305204e-01
1204.5
1135.02
1333
1358
460
128
161
137
1571
1587
328
225
255
310
0
12
-0.0613860
-0.024361
5.504249e-01
3611.5
3768.48
3743
3809
961
131
158
133
4686
4539
1171
224
253
346
0
13
-0.0605838
-0.023593
5.488451e-01
2083.5
2172.86
2208
2221
865
124
158
155
2787
2733
739
213
230
208
0
14
0.3326575
0.119452
2.671534e-01
1431.5
1136.71
1548
1605
829
116
149
130
1559
1637
769
211
216
76
0
15
0.3721319
0.136271
2.391794e-01
798.5
616.95
925
1002
472
126
155
125
943
957
293
210
215
65
0
16
0.1959775
0.073110
3.518419e-01
1320.5
1152.77
1438
1505
712
117
152
128
1580
1559
576
213
221
78
0
17
-0.0152051
-0.005921
5.122867e-01
1371.5
1386.03
1495
1557
566
123
153
131
1852
1827
477
209
214
71
0
18
0.3670064
0.137013
2.379834e-01
987.5
765.70
1119
1171
520
131
167
145
1123
1107
319
214
220
86
0
19
0.3868970
0.144932
2.254242e-01
1824.5
1395.33
1947
2000
834
122
152
126
1867
1897
690
213
218
76
0
20
0.1620076
0.062911
3.717238e-01
1850.5
1653.94
1984
2039
714
133
161
134
2168
2114
618
208
214
71
0
Total number of rows:
25392
Table truncated, full table size
2598 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM37590_532.tif.gz
57.8 Mb
(ftp)
(http)
TIFF
GSM37590_635.tif.gz
58.2 Mb
(ftp)
(http)
TIFF
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