GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM37592
Query DataSets for GSM37592
Status
Public on Dec 16, 2004
Title
ENCODE: MeH3K4-IMR90 Rep3
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using MeH3K4 antibody
Organism
Homo sapiens
Extracted molecule
genomic DNA
Channel 2
Source name
input DNA
Organism
Homo sapiens
Extracted molecule
genomic DNA
Description
Genome-wide location analysis of dimethylated K4 histone 3 binding at ENCODE regions in IMR90 cells. Replicate 3 of 3. Array ID in the lab is ENC251.
Keywords = ENCODE, ChIP-on-Chip, dimethylated K4 histone 3
Submission date
Dec 14, 2004
Last update date
May 27, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE2072
ENCODE: Histone H3 acetylation and K4 methylation in IMR90 cells
Data table header descriptions
ID_REF
VALUE
log ratio (F635/F532)
STATISTICS
statistics
P-VAL
p-value calculated using single array error model
F635_INT
F635 intensity with background intensity subtracted (normalized)
F532_INT
F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN
F635 mdian intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
FLAG
flag from GenePro, 0 is useful
Data table
ID_REF
VALUE
STATISTICS
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
FLAG
1
0.5381507
0.203148
1.191321e-01
503.5
346.74
602
589
211
96
114
80
635
641
113
183
193
58
0
2
0.3280644
0.122522
2.384560e-01
471.5
375.60
569
556
224
95
111
74
681
729
198
192
201
71
0
3
0.1387450
0.054760
3.752814e-01
1070.5
972.35
1180
1198
362
107
116
72
1446
1423
265
192
192
45
0
4
0.3747902
0.143830
2.018653e-01
617.5
476.23
707
722
226
87
110
75
800
797
195
182
185
42
0
5
0.5369312
0.202073
1.203786e-01
678.5
467.65
783
821
277
102
112
70
796
812
185
189
190
48
0
6
0.5966604
0.218513
1.023033e-01
584.5
386.52
691
671
254
104
115
68
692
706
222
189
196
49
0
7
0.9661115
0.325417
2.943620e-02
398.5
203.99
491
506
219
90
110
76
455
460
144
186
185
54
0
8
-0.4821176
-0.187864
8.622775e-01
618.5
863.92
724
712
217
103
111
66
1295
1300
184
180
185
49
0
9
-1.4589293
-0.418749
9.924707e-01
72.5
199.31
172
196
113
97
114
82
447
421
119
184
195
131
0
10
1.0388828
0.157213
1.807087e-01
58.5
28.47
150
171
131
89
108
76
229
248
115
185
186
45
-50
11
0.1020749
0.039055
4.103192e-01
231.5
215.69
326
310
122
92
110
69
473
466
70
189
193
51
0
12
-0.2445962
-0.097060
7.134392e-01
1156.5
1370.18
1255
1218
331
96
112
74
1948
1898
328
184
189
49
0
13
-0.4104417
-0.155688
8.169542e-01
430.5
572.17
524
568
241
91
109
74
930
946
178
189
192
47
0
14
-0.1060616
-0.036611
5.841559e-01
434.5
467.65
530
559
385
93
112
73
788
778
291
181
187
45
0
15
0.8374508
0.269633
5.875635e-02
364.5
203.99
457
488
268
90
116
81
459
442
177
190
198
70
0
16
-0.2362502
-0.088311
6.959090e-01
323.5
381.06
430
469
204
104
112
67
697
661
153
201
210
94
0
17
-0.3502815
-0.135605
7.844259e-01
493.5
629.12
592
662
246
96
112
76
1007
988
138
193
192
43
0
18
0.5151149
0.173694
1.566440e-01
252.5
176.68
355
374
194
100
113
82
426
414
127
192
197
59
0
19
0.3673140
0.144067
2.014778e-01
1290.5
1000.43
1389
1371
358
96
111
77
1477
1489
294
187
198
91
0
20
0.1435084
0.055213
3.742843e-01
560.5
507.43
659
691
255
96
109
70
850
860
189
192
209
171
0
Total number of rows:
25392
Table truncated, full table size
2469 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM37592_532.tif.gz
14.0 Mb
(ftp)
(http)
TIFF
GSM37592_635.tif.gz
14.2 Mb
(ftp)
(http)
TIFF
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|