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Sample GSM37592 Query DataSets for GSM37592
Status Public on Dec 16, 2004
Title ENCODE: MeH3K4-IMR90 Rep3
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using MeH3K4 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of dimethylated K4 histone 3 binding at ENCODE regions in IMR90 cells. Replicate 3 of 3. Array ID in the lab is ENC251.
Keywords = ENCODE, ChIP-on-Chip, dimethylated K4 histone 3
 
Submission date Dec 14, 2004
Last update date May 27, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE2072 ENCODE: Histone H3 acetylation and K4 methylation in IMR90 cells

Data table header descriptions
ID_REF
VALUE log ratio (F635/F532)
STATISTICS statistics
P-VAL p-value calculated using single array error model
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful

Data table
ID_REF VALUE STATISTICS P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG
1 0.5381507 0.203148 1.191321e-01 503.5 346.74 602 589 211 96 114 80 635 641 113 183 193 58 0
2 0.3280644 0.122522 2.384560e-01 471.5 375.60 569 556 224 95 111 74 681 729 198 192 201 71 0
3 0.1387450 0.054760 3.752814e-01 1070.5 972.35 1180 1198 362 107 116 72 1446 1423 265 192 192 45 0
4 0.3747902 0.143830 2.018653e-01 617.5 476.23 707 722 226 87 110 75 800 797 195 182 185 42 0
5 0.5369312 0.202073 1.203786e-01 678.5 467.65 783 821 277 102 112 70 796 812 185 189 190 48 0
6 0.5966604 0.218513 1.023033e-01 584.5 386.52 691 671 254 104 115 68 692 706 222 189 196 49 0
7 0.9661115 0.325417 2.943620e-02 398.5 203.99 491 506 219 90 110 76 455 460 144 186 185 54 0
8 -0.4821176 -0.187864 8.622775e-01 618.5 863.92 724 712 217 103 111 66 1295 1300 184 180 185 49 0
9 -1.4589293 -0.418749 9.924707e-01 72.5 199.31 172 196 113 97 114 82 447 421 119 184 195 131 0
10 1.0388828 0.157213 1.807087e-01 58.5 28.47 150 171 131 89 108 76 229 248 115 185 186 45 -50
11 0.1020749 0.039055 4.103192e-01 231.5 215.69 326 310 122 92 110 69 473 466 70 189 193 51 0
12 -0.2445962 -0.097060 7.134392e-01 1156.5 1370.18 1255 1218 331 96 112 74 1948 1898 328 184 189 49 0
13 -0.4104417 -0.155688 8.169542e-01 430.5 572.17 524 568 241 91 109 74 930 946 178 189 192 47 0
14 -0.1060616 -0.036611 5.841559e-01 434.5 467.65 530 559 385 93 112 73 788 778 291 181 187 45 0
15 0.8374508 0.269633 5.875635e-02 364.5 203.99 457 488 268 90 116 81 459 442 177 190 198 70 0
16 -0.2362502 -0.088311 6.959090e-01 323.5 381.06 430 469 204 104 112 67 697 661 153 201 210 94 0
17 -0.3502815 -0.135605 7.844259e-01 493.5 629.12 592 662 246 96 112 76 1007 988 138 193 192 43 0
18 0.5151149 0.173694 1.566440e-01 252.5 176.68 355 374 194 100 113 82 426 414 127 192 197 59 0
19 0.3673140 0.144067 2.014778e-01 1290.5 1000.43 1389 1371 358 96 111 77 1477 1489 294 187 198 91 0
20 0.1435084 0.055213 3.742843e-01 560.5 507.43 659 691 255 96 109 70 850 860 189 192 209 171 0

Total number of rows: 25392

Table truncated, full table size 2469 Kbytes.




Supplementary file Size Download File type/resource
GSM37592_532.tif.gz 14.0 Mb (ftp)(http) TIFF
GSM37592_635.tif.gz 14.2 Mb (ftp)(http) TIFF

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