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Sample GSM379704 Query DataSets for GSM379704
Status Public on Jun 01, 2009
Title HSF6.ESC
Sample type RNA
 
Source name HSF6, ESC
Organism Homo sapiens
Characteristics cell line: HSF6
stage: ESC
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent and alcohol precipitated. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description ESC stage from HSF6 cultures.
Data processing The data were normalised using quantile normalisation with BeadStudio.
 
Submission date Mar 12, 2009
Last update date Mar 12, 2009
Contact name Ronald P. Hart
E-mail(s) rhart@rutgers.edu
Phone 848-445-1783
Organization name Rutgers University
Department Cell Biology & Neuroscience
Street address 604 Allison Rd Rm B430
City Piscataway
State/province NJ
ZIP/Postal code 08854
Country USA
 
Platform ID GPL6884
Series (1)
GSE15206 Identification of differentiation status of human embryonic stem cell cultures.

Data table header descriptions
ID_REF
VALUE quantile-normalized signal value
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 106.4489 39 5.203374 0.9305177
ILMN_2055271 136.9649 35 4.923055 0.09673025
ILMN_1736007 130.2837 54 4.843253 0.23297
ILMN_2383229 152.6213 36 6.610295 0.01089918
ILMN_1806310 116.3007 34 5.232612 0.6893733
ILMN_1779670 128.6781 49 4.972438 0.2724796
ILMN_2321282 121.8773 44 5.75136 0.506812
ILMN_1671474 129.2037 52 5.792912 0.2629428
ILMN_1772582 120.4692 48 5.519202 0.5613079
ILMN_1735698 130.5714 63 5.238943 0.2234332
ILMN_1653355 177.185 31 7.464749 0
ILMN_1717783 118.8929 41 6.143399 0.6089918
ILMN_1705025 120.1544 44 4.448407 0.5667575
ILMN_1814316 118.8169 50 4.194117 0.6103542
ILMN_2359168 121.2119 42 6.866858 0.5286103
ILMN_1731507 115.7767 41 5.111229 0.7070845
ILMN_1787689 115.9281 44 4.294207 0.7057221
ILMN_1745607 121.0505 33 6.280771 0.5381472
ILMN_2136495 141.1471 45 5.294705 0.05994551
ILMN_1668111 109.1023 35 4.677557 0.8882834

Total number of rows: 48803

Table truncated, full table size 1970 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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