NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM379705 Query DataSets for GSM379705
Status Public on Jun 01, 2009
Title H1.ESC
Sample type RNA
 
Source name H1, ESC
Organism Homo sapiens
Characteristics cell line: H1
stage: ESC
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent and alcohol precipitated. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description ESC stage from H1 cultures.
Data processing The data were normalised using quantile normalisation with BeadStudio.
 
Submission date Mar 12, 2009
Last update date Mar 12, 2009
Contact name Ronald P. Hart
E-mail(s) rhart@rutgers.edu
Phone 848-445-1783
Organization name Rutgers University
Department Cell Biology & Neuroscience
Street address 604 Allison Rd Rm B430
City Piscataway
State/province NJ
ZIP/Postal code 08854
Country USA
 
Platform ID GPL6884
Series (1)
GSE15206 Identification of differentiation status of human embryonic stem cell cultures.

Data table header descriptions
ID_REF
VALUE quantile-normalized signal value
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 128.4755 51 7.101495 0.2587601
ILMN_2055271 133.4799 28 8.971494 0.1401617
ILMN_1736007 131.6317 55 5.090452 0.1684636
ILMN_2383229 138.7806 29 8.391555 0.08625337
ILMN_1806310 114.9194 39 5.421027 0.7331536
ILMN_1779670 136.4782 38 5.92904 0.1037736
ILMN_2321282 126.5957 29 6.775473 0.3234501
ILMN_1671474 131.2948 47 6.097244 0.1778976
ILMN_1772582 114.8964 34 7.540179 0.7358491
ILMN_1735698 139.5797 49 6.394403 0.07008086
ILMN_1653355 153.8443 26 8.028531 0.001347709
ILMN_1717783 117.5403 36 5.329168 0.6455526
ILMN_1705025 129.3382 58 4.62082 0.2318059
ILMN_1814316 124.9901 33 5.969126 0.384097
ILMN_2359168 140.7426 39 8.577055 0.0606469
ILMN_1731507 104.8555 40 4.574333 0.9568733
ILMN_1787689 106.0414 29 5.08121 0.9380054
ILMN_1745607 125.9723 37 7.163806 0.3423181
ILMN_2136495 174.6776 39 7.93353 0
ILMN_1668111 115.8624 36 5.168245 0.7075472

Total number of rows: 48803

Table truncated, full table size 1964 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap