NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM379706 Query DataSets for GSM379706
Status Public on Jun 01, 2009
Title HSF1.NSC
Sample type RNA
 
Source name HSF1, NSC
Organism Homo sapiens
Characteristics cell line: HSF1
stage: NSC
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent and alcohol precipitated. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description NSC stage from HSF1 cultures.
Data processing The data were normalised using quantile normalisation with BeadStudio.
 
Submission date Mar 12, 2009
Last update date Mar 12, 2009
Contact name Ronald P. Hart
E-mail(s) rhart@rutgers.edu
Phone 848-445-1783
Organization name Rutgers University
Department Cell Biology & Neuroscience
Street address 604 Allison Rd Rm B430
City Piscataway
State/province NJ
ZIP/Postal code 08854
Country USA
 
Platform ID GPL6884
Series (1)
GSE15206 Identification of differentiation status of human embryonic stem cell cultures.

Data table header descriptions
ID_REF
VALUE quantile-normalized signal value
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 97.15065 33 3.918514 0.9905533
ILMN_2055271 142.6967 27 7.598237 0.04588394
ILMN_1736007 137.5957 45 5.620317 0.08502024
ILMN_2383229 133.1253 41 6.899569 0.1605938
ILMN_1806310 109.2433 37 3.638996 0.8839406
ILMN_1779670 135.7825 53 5.492072 0.1093117
ILMN_2321282 124.993 36 6.381014 0.3819163
ILMN_1671474 136.0883 40 5.580328 0.1012146
ILMN_1772582 115.8255 47 4.830877 0.7044535
ILMN_1735698 127.018 37 4.951227 0.3252362
ILMN_1653355 169.1309 47 8.106944 0
ILMN_1717783 109.9259 54 4.939915 0.874494
ILMN_1705025 125.632 48 4.486298 0.363023
ILMN_1814316 143.9118 36 6.775662 0.03238866
ILMN_2359168 153.2195 39 8.504664 0.002699055
ILMN_1731507 111.146 33 5.409729 0.8488529
ILMN_1787689 127.5751 46 4.894264 0.3022942
ILMN_1745607 5147.534 45 285.1215 0
ILMN_2136495 133.417 48 4.709261 0.1538462
ILMN_1668111 111.6811 30 8.323254 0.8353576

Total number of rows: 48803

Table truncated, full table size 1968 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap