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Sample GSM38090 Query DataSets for GSM38090
Status Public on Jan 15, 2005
Title Breast - 8230
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 15
Mammogram: Yes
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: Yes
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 1
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 692.6 P 0.000581
AFFX-BioB-M_at 915.1 P 0.000044
AFFX-BioB-3_at 501.1 P 0.000044
AFFX-BioC-5_at 1838.1 P 0.000044
AFFX-BioC-3_at 2511.3 P 0.000044
AFFX-BioDn-5_at 4781.4 P 0.000044
AFFX-BioDn-3_at 9487.9 P 0.00007
AFFX-CreX-5_at 24759 P 0.000052
AFFX-CreX-3_at 31116.8 P 0.000044
AFFX-DapX-5_at 1272.8 P 0.00006
AFFX-DapX-M_at 2366.6 P 0.000509
AFFX-DapX-3_at 2813 P 0.000052
AFFX-LysX-5_at 180.9 P 0.000297
AFFX-LysX-M_at 276.8 P 0.001409
AFFX-LysX-3_at 495.9 P 0.000052
AFFX-PheX-5_at 218.7 P 0.000095
AFFX-PheX-M_at 376.4 P 0.00011
AFFX-PheX-3_at 312.2 P 0.00039
AFFX-ThrX-5_at 361.5 P 0.000095
AFFX-ThrX-M_at 486 P 0.000044

Total number of rows: 54675

Table truncated, full table size 1446 Kbytes.




Supplementary file Size Download File type/resource
GSM38090.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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