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Sample GSM38208 Query DataSets for GSM38208
Status Public on Jan 06, 2005
Title SAGE of skeletal muscle of adrenalectomized mice 24 hours after an IP injection with cortisol (0.1mg)
Sample type SAGE
Anchor NlaIII
Tag Count 147696
Tag Length 10
 
Source name skeletal muscle (gastrocnemius)
Organism Mus musculus
Extracted molecule total RNA
 
Description Ten mice were adrenalectomized, and received an IP injection of cortisol (0.1mg) 24h before experiment.
Gastrocnemius muscle were dissected from 10 C57BL6 male mice and pooled together.
Total RNA was isolated by Trizol.
Keywords = skeletal muscle
Keywords = glucocorticoids
 
Submission date Dec 27, 2004
Last update date Nov 19, 2008
Contact name Andre Boivin
E-mail(s) Andre.Boivin@crchul.ulaval.ca
Phone (418)-654-2296-Ext-6185
Fax (418)-654-2761
Organization name Laval University Hospital Center Research Center
Department SAGE Laboratory
Lab Mol. Endocrinol. & Oncology Res. Center, Laval University
Street address 2705 Boul. Laurier
City Quebec City
State/province Quebec
ZIP/Postal code G1V 4G2
Country Canada
 
Platform ID GPL11
Series (1)
GSE2122 Skeletal muscle of glucocorticoid deprived and treated mice by SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million
PERCENT

Data table
TAG COUNT TPM PERCENT
GTGATGCTAA 3921 26547.77 2.654777
GAGGGCCGGA 3697 25031.15 2.503115
TGACAGAAGA 3119 21117.70 2.111770
AAGATCAAGA 3017 20427.09 2.042709
GAGCAGACCG 2845 19262.54 1.926254
ACTGTCCGGG 2737 18531.31 1.853131
CCTACTAACC 2211 14969.94 1.496994
CATCTTCAGC 1811 12261.67 1.226167
ATGACTGATA 1806 12227.82 1.222782
GCTGCCCTCC 1787 12099.18 1.209918
GCCTCCAAGG 1623 10988.79 1.098879
GGTGCCAACT 1464 9912.25 0.991225
AGCAGTCCCC 1434 9709.13 0.970913
ATTGACGTGG 1391 9417.99 0.941799
AAAGTCATTG 1353 9160.71 0.916071
AAGAAGGTAA 1017 6885.77 0.688577
GTAGTGGAAG 987 6682.65 0.668265
AGGACAAATA 924 6256.09 0.625609
CCTACAGTTG 921 6235.78 0.623578
TGGGCCACCT 850 5755.06 0.575506

Total number of rows: 31685

Table truncated, full table size 848 Kbytes.




Supplementary data files not provided

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