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Sample GSM383694 Query DataSets for GSM383694
Status Public on Mar 20, 2009
Title SAGE_Brain_astrocytoma_grade_II_B_H530
Sample type SAGE
Anchor NlaIII
Tag Count 102439
Tag Length 10
 
Source name brain, astrocytoma grade ii, bulk, short sage, adult, female
Organism Homo sapiens
Characteristics organ/tissue: brain
tissue preparation: bulk
age: 66 yrs
sex: female
cell type: astrocytoma grade II
Biomaterial provider Duke Tissue Bank
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 348
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 77 751.67
AAAAAAAAAC 1 9.76
AAAAAAAAAG 3 29.29
AAAAAAAAAT 2 19.52
AAAAAAAACA 1 9.76
AAAAAAAACT 1 9.76
AAAAAAAAGA 1 9.76
AAAAAAAAGG 1 9.76
AAAAAAAATA 1 9.76
AAAAAAAATG 2 19.52
AAAAAAAATT 1 9.76
AAAAAAACCT 1 9.76
AAAAAAAGCA 1 9.76
AAAAAAAGTG 1 9.76
AAAAAAATAA 2 19.52
AAAAAAATAG 1 9.76
AAAAAAATCA 3 29.29
AAAAAAATGG 1 9.76
AAAAAAATTG 1 9.76
AAAAAAATTT 3 29.29

Total number of rows: 34715

Table truncated, full table size 623 Kbytes.




Supplementary data files not provided

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