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Sample GSM383701 Query DataSets for GSM383701
Status Public on Mar 20, 2009
Title SAGE_Brain_astrocytoma_grade_III_B_H1020
Sample type SAGE
Anchor NlaIII
Tag Count 51573
Tag Length 10
 
Source name brain, anaplastic, bulk, non-normalized, short sage, astrocytoma grade iii
Organism Homo sapiens
Characteristics organ/tissue: brain
tissue preparation: bulk
sex: unknown
cell type: astrocytoma, right parietal occipital lobe, cerebral cortex
Biomaterial provider Duke Brain Tumor Bank
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 54
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_H1020
Library_producer: Deric Olschner
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 45 872.55
AAAAAAAAAT 2 38.78
AAAAAAAAGA 1 19.39
AAAAAAAAGG 1 19.39
AAAAAAAATA 1 19.39
AAAAAAAATT 1 19.39
AAAAAAACCT 1 19.39
AAAAAAAGAA 1 19.39
AAAAAAAGAC 1 19.39
AAAAAAAGCC 1 19.39
AAAAAAATGT 1 19.39
AAAAAAATTG 1 19.39
AAAAAACATC 1 19.39
AAAAAACCCC 1 19.39
AAAAAACCCT 1 19.39
AAAAAACGGC 1 19.39
AAAAAAGCAG 1 19.39
AAAAAAGCGT 1 19.39
AAAAAAGGCT 1 19.39
AAAAAAGTGG 1 19.39

Total number of rows: 30738

Table truncated, full table size 571 Kbytes.




Supplementary data files not provided

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