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Sample GSM383708 Query DataSets for GSM383708
Status Public on Mar 20, 2009
Title SAGE_Brain_ependymoma_B_1150
Sample type SAGE
Anchor NlaIII
Tag Count 62373
Tag Length 10
 
Source name brain, ependymoma, short SAGE, non-normalized, bulk
Organism Homo sapiens
Characteristics organ/tissue: brain
tissue preparation: bulk
age: 4 years
sex: female
cell type: ependymoma
other information: recurrent glioma from patient with previous ependymoblastoma in same fronto-parietal region
Biomaterial provider Duke Brain Tumor Bank
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 137
Tagging_enzyme: BsmF I
Old_library_name: SAGE_glioma_1150
Library_producer: Brian E. Fee
Laboratory: Gregory Riggins, Duke University Medical Center
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 46 737.50
AAAAAAAAGA 5 80.16
AAAAAAAATT 1 16.03
AAAAAAACAG 1 16.03
AAAAAAACAT 1 16.03
AAAAAAAGAA 2 32.07
AAAAAAATAA 1 16.03
AAAAAAATCA 1 16.03
AAAAAAATTA 1 16.03
AAAAAAATTT 1 16.03
AAAAAACAAA 1 16.03
AAAAAACACA 1 16.03
AAAAAACCCA 3 48.10
AAAAAACTAC 1 16.03
AAAAAACTCC 5 80.16
AAAAAAGAAA 1 16.03
AAAAAAGCTT 1 16.03
AAAAAAGGAG 1 16.03
AAAAAATAAA 7 112.23
AAAAAATCGA 2 32.07

Total number of rows: 23324

Table truncated, full table size 435 Kbytes.




Supplementary data files not provided

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