NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM383709 Query DataSets for GSM383709
Status Public on Mar 20, 2009
Title SAGE_Brain_ependymoma_B_1394
Sample type SAGE
Anchor NlaIII
Tag Count 56314
Tag Length 10
 
Source name brain, ependymoma, short SAGE, non-normalized, bulk
Organism Homo sapiens
Characteristics organ/tissue: brain
tissue preparation: bulk
age: 6.3 years
sex: female
cell type: ependymoma
other information: recurrent Neuroectodermal tumor w/epend diff. tumor, from 6.3 year old female with history of ependymoma
Biomaterial provider Duke Brain Tumor Bank
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 139
Tagging_enzyme: BsmF I
Old_library_name: SAGE_ependymoma_1394
Library_producer: Brian E. Fee
Laboratory: Gregory Riggins, Duke University Medical Center
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 39 692.55
AAAAAAAAAG 3 53.27
AAAAAAAAAT 1 17.76
AAAAAAAAGA 5 88.79
AAAAAAAATG 1 17.76
AAAAAAAATT 2 35.52
AAAAAAACTC 1 17.76
AAAAAAATCA 2 35.52
AAAAAAATTT 2 35.52
AAAAAACAAA 1 17.76
AAAAAACACA 1 17.76
AAAAAACAGT 1 17.76
AAAAAACCAT 1 17.76
AAAAAACCCA 6 106.55
AAAAAACTCA 1 17.76
AAAAAACTCC 2 35.52
AAAAAACTTA 1 17.76
AAAAAAGAAA 1 17.76
AAAAAAGCTA 1 17.76
AAAAAAGGAG 1 17.76

Total number of rows: 22956

Table truncated, full table size 427 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap