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Sample GSM383718

Query DataSets for GSM383718

Status

Public on Mar 20, 2009

Title

SAGE_Brain_ependymoma_B_R628

Sample type

SAGE

Anchor

NlaIII

Tag Count

120431

Tag Length

Source name

brain, non-normalized, bulk, ependymoma, short SAGE

Organism

Homo sapiens

Characteristics

organ/tissue: brain
tissue preparation: bulk
age: 3
sex: female
cell type: ependymoma
other information: Grade II

Biomaterial provider

Duke Tissue Bank

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 151
Tagging_enzyme: BsmF I
Library_producer: Brian E. Fee
Laboratory: Gregory Riggins, Duke University Medical Center
References: K. Boon et al., Proc Natl Acad Sci U S A 99, 11287-92 (2002) [PUBMED=12119410]

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	49	406.87
AAAAAAAAAG	1	8.30
AAAAAAAAGA	2	16.61
AAAAAAAATG	1	8.30
AAAAAAACAA	1	8.30
AAAAAAACTC	1	8.30
AAAAAAAGAA	1	8.30
AAAAAAAGCT	1	8.30
AAAAAAAGGA	2	16.61
AAAAAAATCC	1	8.30
AAAAAAATTT	1	8.30
AAAAAACAAA	1	8.30
AAAAAACCCA	8	66.43
AAAAAACCCC	1	8.30
AAAAAACGCA	1	8.30
AAAAAACTCC	4	33.21
AAAAAACTTA	1	8.30
AAAAAAGCAG	1	8.30
AAAAAAGCTG	1	8.30
AAAAAAGGAG	3	24.91

Total number of rows: 39836

Table truncated, full table size 715 Kbytes.

Supplementary data files not provided