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Status
Public on Mar 20, 2009
Title
SAGE_Brain_medulloblastoma_B_1273
Sample type
SAGE
Anchor
NlaIII
Tag Count
38614
Tag Length
10
Source name
medulloblastoma, cerebellum, bulk, non-normalized, short SAGE
Organism
Homo sapiens
Characteristics
organ/tissue: cerebellum tissue preparation: bulk cell type: medulloblastoma, cerebellum other information: medulloblastoma grade IV
Biomaterial provider
Duke Brain Tumor Bank
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 51 Tagging_enzyme: BsmF I Old_library_name: SAGE_Duke_1273 Library_producer: I-Mei Siu Laboratory: Gregory Riggins, Duke University Medical Center
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL4
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309
Cancer Genome Anatomy Project (CGAP) Human SAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
2
51.79
AAAAAAAACA
1
25.90
AAAAAAAACT
1
25.90
AAAAAAAAGA
1
25.90
AAAAAAAATC
1
25.90
AAAAAAACCC
1
25.90
AAAAAAAGGC
1
25.90
AAAAAAATAA
1
25.90
AAAAAAATTT
2
51.79
AAAAAACAGC
1
25.90
AAAAAACCCA
2
51.79
AAAAAACTCC
3
77.69
AAAAAAGAGA
1
25.90
AAAAAAGGAG
2
51.79
AAAAAAGTTT
1
25.90
AAAAAATAAA
1
25.90
AAAAAATGAA
1
25.90
AAAAAATGCT
3
77.69
AAAAACCATA
1
25.90
AAAAACCCAG
1
25.90
Total number of rows: 17236 Table truncated, full table size 321 Kbytes .Supplementary data files not provided