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| Status |
Public on Mar 20, 2009 |
| Title |
SAGE_Brain_medulloblastoma_B_98-05-P040 |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
89258 |
| Tag Length |
10 |
| |
|
| Source name |
cerebellum, medulloblastoma, metastasis, bulk, short sage, male, juvenile
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: cerebellum
tissue preparation: bulk
age: 3.9
sex: male
cell type: medulloblastoma
|
| Biomaterial provider |
COLLABORATIVE HUMAN TISSUE NETWORK
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
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| |
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| Description |
CGAP_Numeric_library_ID: 413
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD
Laboratory: RIGGINS LABORATORY DUKE
References: K. Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene 22, 7687-94 (2003) [PUBMED=14576832]
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
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| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
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| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
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| Platform ID |
GPL4 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
282 |
3159.38 |
| AAAAAAAAAC |
2 |
22.41 |
| AAAAAAAAAG |
3 |
33.61 |
| AAAAAAAAAT |
4 |
44.81 |
| AAAAAAAACT |
1 |
11.20 |
| AAAAAAAAGA |
2 |
22.41 |
| AAAAAAAAGG |
4 |
44.81 |
| AAAAAAAATG |
2 |
22.41 |
| AAAAAAAATT |
1 |
11.20 |
| AAAAAAACAG |
3 |
33.61 |
| AAAAAAAGCT |
1 |
11.20 |
| AAAAAAAGGG |
1 |
11.20 |
| AAAAAAATAC |
1 |
11.20 |
| AAAAAAATCA |
1 |
11.20 |
| AAAAAAATGC |
1 |
11.20 |
| AAAAAAATGG |
3 |
33.61 |
| AAAAAACACA |
1 |
11.20 |
| AAAAAACAGC |
9 |
100.83 |
| AAAAAACATT |
4 |
44.81 |
| AAAAAACCCA |
11 |
123.24 |
Total number of rows: 34995
Table truncated, full table size 651 Kbytes.
| Supplementary data files not provided |
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