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| Status |
Public on Mar 20, 2009 |
| Title |
SAGE_Brain_medulloblastoma_B_DL5 |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
83671 |
| Tag Length |
10 |
| |
|
| Source name |
cerebellum, medulloblastoma, bulk, short sage, male, juvenile
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: cerebellum
tissue preparation: bulk
age: 5 yrs
sex: male
cell type: desmoplastic medulloblastoma
|
| Biomaterial provider |
COLLABORATIVE HUMAN TISSUE NETWORK
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
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| |
|
| Description |
CGAP_Numeric_library_ID: 399
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD
Laboratory: RIGGINS LABORATORY DUKE
References: K. Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene 22, 7687-94 (2003) [PUBMED=14576832]
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
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| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
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| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
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| Platform ID |
GPL4 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
|
| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
165 |
1972.01 |
| AAAAAAAAAC |
5 |
59.76 |
| AAAAAAAAAG |
3 |
35.85 |
| AAAAAAAAAT |
3 |
35.85 |
| AAAAAAAACA |
1 |
11.95 |
| AAAAAAAACT |
1 |
11.95 |
| AAAAAAAAGA |
2 |
23.90 |
| AAAAAAAAGG |
1 |
11.95 |
| AAAAAAAATT |
2 |
23.90 |
| AAAAAAACAA |
1 |
11.95 |
| AAAAAAACTC |
1 |
11.95 |
| AAAAAAATAG |
1 |
11.95 |
| AAAAAAATGG |
1 |
11.95 |
| AAAAAAATTT |
1 |
11.95 |
| AAAAAACATT |
1 |
11.95 |
| AAAAAACCCA |
4 |
47.81 |
| AAAAAACGAG |
1 |
11.95 |
| AAAAAACTCA |
1 |
11.95 |
| AAAAAACTCG |
1 |
11.95 |
| AAAAAACTGT |
1 |
11.95 |
Total number of rows: 28721
Table truncated, full table size 535 Kbytes.
| Supplementary data files not provided |
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