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Sample GSM383754 Query DataSets for GSM383754
Status Public on Mar 20, 2009
Title SAGE_Brain_medulloblastoma_B_H275
Sample type SAGE
Anchor NlaIII
Tag Count 72318
Tag Length 10
 
Source name cerebellum, medulloblastoma, bulk, short sage, adult, female
Organism Homo sapiens
Characteristics organ/tissue: cerebellum
tissue preparation: bulk
age: 22
sex: female
cell type: medulloblastoma
Biomaterial provider DUKE BRAIN TISSUE BANK
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 397
Tagging_enzyme: BsmF I
Library_producer: KATHY BOON, PHD
Laboratory: RIGGINS LABORATORY DUKE
References: K. Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene 22, 7687-94 (2003) [PUBMED=14576832]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 241 3332.50
AAAAAAAAAC 2 27.66
AAAAAAAAAG 1 13.83
AAAAAAAAAT 1 13.83
AAAAAAAACA 2 27.66
AAAAAAAAGA 4 55.31
AAAAAAAAGG 1 13.83
AAAAAAAATC 1 13.83
AAAAAAAATT 1 13.83
AAAAAAACAA 3 41.48
AAAAAAAGAA 1 13.83
AAAAAAAGCA 3 41.48
AAAAAAATAA 1 13.83
AAAAAAATCA 3 41.48
AAAAAAATTT 1 13.83
AAAAAACAAG 1 13.83
AAAAAACAGC 5 69.14
AAAAAACATT 3 41.48
AAAAAACCCA 9 124.45
AAAAAAGAAA 1 13.83

Total number of rows: 26151

Table truncated, full table size 487 Kbytes.




Supplementary data files not provided

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