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Status |
Public on Mar 20, 2009 |
Title |
SAGE_Brain_medulloblastoma_B_H484 |
Sample type |
SAGE |
Anchor |
NlaIII
|
Tag Count |
57469 |
Tag Length |
10 |
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|
Source name |
cerebellum, medulloblastoma, bulk, short sage, male, juvenile
|
Organism |
Homo sapiens |
Characteristics |
organ/tissue: cerebellum tissue preparation: bulk age: 5 yrs sex: male cell type: anaplastic medulloblastoma
|
Biomaterial provider |
DUKE BRAIN TISSUE BANK
|
Extracted molecule |
total RNA |
Extraction protocol |
N/A
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|
Description |
CGAP_Numeric_library_ID: 407 Tagging_enzyme: BsmF I Library_producer: KATHY BOON, PHD Laboratory: RIGGINS LABORATORY DUKE References: K. Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene 22, 7687-94 (2003) [PUBMED=14576832]
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Submission date |
Mar 19, 2009 |
Last update date |
Mar 20, 2009 |
Contact name |
Cancer Genome Anatomy Project CGAP |
E-mail(s) |
cgapbs-r@mail.nih.gov
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Phone |
301-496-1550
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URL |
http://cgap.nci.nih.gov/
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Organization name |
National Cancer Institute
|
Department |
Cancer Genome Anatomy Project
|
Street address |
|
City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20852 |
Country |
USA |
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|
Platform ID |
GPL4 |
Series (2) |
GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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Data table header descriptions |
TAG |
|
COUNT |
|
TPM |
tags per million |
Data table |
TAG |
COUNT |
TPM |
AAAAAAAAAA |
93 |
1618.26 |
AAAAAAAAAC |
1 |
17.40 |
AAAAAAAAAG |
5 |
87.00 |
AAAAAAAAAT |
1 |
17.40 |
AAAAAAAACA |
2 |
34.80 |
AAAAAAAAGA |
3 |
52.20 |
AAAAAAAAGG |
1 |
17.40 |
AAAAAAAATC |
1 |
17.40 |
AAAAAAACAA |
2 |
34.80 |
AAAAAAACAG |
2 |
34.80 |
AAAAAAAGAA |
2 |
34.80 |
AAAAAAAGCA |
1 |
17.40 |
AAAAAAATAA |
2 |
34.80 |
AAAAAAATAG |
1 |
17.40 |
AAAAAAATCA |
2 |
34.80 |
AAAAAAATGC |
1 |
17.40 |
AAAAAACAAA |
1 |
17.40 |
AAAAAACAGA |
1 |
17.40 |
AAAAAACAGC |
5 |
87.00 |
AAAAAACATC |
1 |
17.40 |
Total number of rows: 25712
Table truncated, full table size 479 Kbytes.
Supplementary data files not provided |
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