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Status |
Public on Mar 20, 2009 |
Title |
SAGE_Brain_medulloblastoma_B_H876 |
Sample type |
SAGE |
Anchor |
NlaIII
|
Tag Count |
67404 |
Tag Length |
10 |
|
|
Source name |
cerebellum, medulloblastoma, bulk, short sage, male, juvenile
|
Organism |
Homo sapiens |
Characteristics |
organ/tissue: cerebellum tissue preparation: bulk age: 10 yrs sex: male cell type: large cell medulloblastoma
|
Biomaterial provider |
DUKE BRAIN TISSUE BANK
|
Extracted molecule |
total RNA |
Extraction protocol |
N/A
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|
Description |
CGAP_Numeric_library_ID: 415 Tagging_enzyme: BsmF I Library_producer: KATHY BOON, PHD Laboratory: RIGGINS LABORATORY DUKE References: K. Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene 22, 7687-94 (2003) [PUBMED=14576832]
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Submission date |
Mar 19, 2009 |
Last update date |
Mar 20, 2009 |
Contact name |
Cancer Genome Anatomy Project CGAP |
E-mail(s) |
cgapbs-r@mail.nih.gov
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Phone |
301-496-1550
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URL |
http://cgap.nci.nih.gov/
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Organization name |
National Cancer Institute
|
Department |
Cancer Genome Anatomy Project
|
Street address |
|
City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20852 |
Country |
USA |
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|
Platform ID |
GPL4 |
Series (2) |
GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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Data table header descriptions |
TAG |
|
COUNT |
|
TPM |
tags per million |
Data table |
TAG |
COUNT |
TPM |
AAAAAAAAAA |
270 |
4005.70 |
AAAAAAAAAC |
4 |
59.34 |
AAAAAAAAAG |
3 |
44.51 |
AAAAAAAAAT |
2 |
29.67 |
AAAAAAAACA |
1 |
14.84 |
AAAAAAAAGG |
1 |
14.84 |
AAAAAAAATA |
2 |
29.67 |
AAAAAAAATG |
2 |
29.67 |
AAAAAAAGAA |
3 |
44.51 |
AAAAAAATAA |
2 |
29.67 |
AAAAAAATAG |
1 |
14.84 |
AAAAAAATCA |
3 |
44.51 |
AAAAAAATGC |
1 |
14.84 |
AAAAAAATTC |
1 |
14.84 |
AAAAAAATTT |
1 |
14.84 |
AAAAAACAAA |
3 |
44.51 |
AAAAAACCCA |
4 |
59.34 |
AAAAAACCCT |
1 |
14.84 |
AAAAAACTCC |
4 |
59.34 |
AAAAAAGAAA |
1 |
14.84 |
Total number of rows: 25648
Table truncated, full table size 477 Kbytes.
Supplementary data files not provided |
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