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Sample GSM383759 Query DataSets for GSM383759
Status Public on Mar 20, 2009
Title SAGE_Brain_Medulloblastoma_CL_425C2
Sample type SAGE
Anchor NlaIII
Tag Count 62642
Tag Length 10
 
Source name brain, cell line, medulloblastoma, cancer, extracted sage, male
Organism Homo sapiens
Characteristics organ/tissue: brain
tissue preparation: cell line
age: 5
sex: male
cell type: Medulloblastoma Cell Line
Biomaterial provider DUKE
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 2086
Tagging_enzyme: Mme I
Library_producer: Jennifer B. Edwards
Laboratory: Dr. Gregory Riggins
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 207 3304.49
AAAAAAAAAC 1 15.96
AAAAAAAAAG 1 15.96
AAAAAAAAAT 1 15.96
AAAAAAAACT 2 31.93
AAAAAAAAGA 7 111.75
AAAAAAAATG 1 15.96
AAAAAAACTT 1 15.96
AAAAAAAGCA 1 15.96
AAAAAAAGCG 1 15.96
AAAAAAATAA 1 15.96
AAAAAACATT 1 15.96
AAAAAACCCA 15 239.46
AAAAAACCTT 2 31.93
AAAAAACGGA 1 15.96
AAAAAACTAC 1 15.96
AAAAAACTCA 1 15.96
AAAAAACTCC 4 63.85
AAAAAAGAAA 2 31.93
AAAAAAGGAA 1 15.96

Total number of rows: 21950

Table truncated, full table size 409 Kbytes.




Supplementary data files not provided
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