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Sample GSM383764

Query DataSets for GSM383764

Status

Public on Mar 20, 2009

Title

SAGE_Brain_medulloblastoma_CL_mhh-1

Sample type

SAGE

Anchor

NlaIII

Tag Count

47858

Tag Length

Source name

medulloblastoma, cerebellum, non-normalized, short sage, cell line

Organism

Homo sapiens

Characteristics

organ/tissue: cerebellum
tissue preparation: cell line
sex: unknown
cell type: medulloblastoma, cerebellum
mutations: has pten mutation, negative on screens for 17p loss, negative for c-myc or n-myc amplification
other information: Brain, cell line mhh-1

Biomaterial provider

Torsten Pietsch, Medical School Hannover, Germany

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 18
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_mhh-1
Library_producer: I-Mei Siu
Laboratory: Gregory Riggins, Duke University Medical Center
References: T. Pietsch et al., Cancer Res 54, 3278-87 (1994) [PUBMED=8205550]

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	182	3802.92
AAAAAAAAAC	1	20.90
AAAAAAAAAG	6	125.37
AAAAAAAAAT	2	41.79
AAAAAAAAGA	9	188.06
AAAAAAAAGT	1	20.90
AAAAAAAATA	2	41.79
AAAAAAAATG	1	20.90
AAAAAAAGAA	2	41.79
AAAAAAATAA	3	62.69
AAAAAAATTG	1	20.90
AAAAAACAAA	2	41.79
AAAAAACATT	5	104.48
AAAAAACCCA	2	41.79
AAAAAACTCC	8	167.16
AAAAAAGAAA	3	62.69
AAAAAAGGAT	1	20.90
AAAAAATAAA	1	20.90
AAAAAATCCC	1	20.90
AAAAAATGCT	1	20.90

Total number of rows: 18542

Table truncated, full table size 346 Kbytes.

Supplementary data files not provided