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Sample GSM383778 Query DataSets for GSM383778
Status Public on Mar 20, 2009
Title SAGE_Brain_normal_substantia_nigra_B_1
Sample type SAGE
Anchor NlaIII
Tag Count 41773
Tag Length 10
 
Source name brain, substantia nigra, normal, bulk, extracted short SAGE
Organism Homo sapiens
Characteristics organ/tissue: brain
tissue preparation: bulk
sex: unknown
other information: Short tags are extracted from the long SAGE data
Biomaterial provider Commercially bought Poly A+ RNA fromClontech, Cat #6580-1, Lot #9040718.
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 421
Tagging_enzyme: Mme I
Library_producer: Deric Olschner
Laboratory: Riggins?Lab at Duke University Medical Center
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 172 4117.49
AAAAAAAAAG 1 23.94
AAAAAAAACA 1 23.94
AAAAAAAAGA 2 47.88
AAAAAAAAGT 1 23.94
AAAAAAAATA 1 23.94
AAAAAAAATG 1 23.94
AAAAAAAATT 1 23.94
AAAAAAACTA 1 23.94
AAAAAAAGAA 2 47.88
AAAAAAAGCA 1 23.94
AAAAAAAGCT 1 23.94
AAAAAAATAA 2 47.88
AAAAAAATCA 1 23.94
AAAAAAATCC 1 23.94
AAAAAACAAA 1 23.94
AAAAAACAAG 1 23.94
AAAAAACAGC 1 23.94
AAAAAACATT 3 71.82
AAAAAACCCA 5 119.69

Total number of rows: 17106

Table truncated, full table size 319 Kbytes.




Supplementary data files not provided

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