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Sample GSM383779 Query DataSets for GSM383779
Status Public on Mar 20, 2009
Title SAGE_Brain_normal_thalamus_B_1
Sample type SAGE
Anchor NlaIII
Tag Count 24015
Tag Length 10
 
Source name normal, bulk, thalamus, non-normalized, short sage
Organism Homo sapiens
Characteristics organ/tissue: brain
tissue preparation: bulk
sex: unknown
cell type: normal thalamus
Biomaterial provider Duke Bryan Alzheimer Disease Reseach Center
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 53
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_thalamus
Library_producer: I-Mei Siu
Laboratory: Gregory Riggins, Duke University Medical Center
References: Sui I-M, Lal A, and Riggins GJ: A Database for Normal Gene Expression in the Human Brain. Gene Expression Patterns 1:33-38 (2001)
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 24 999.38
AAAAAAAAAT 1 41.64
AAAAAAAACA 1 41.64
AAAAAAATCA 1 41.64
AAAAAACAGC 1 41.64
AAAAAACCCA 1 41.64
AAAAAACCCG 1 41.64
AAAAAAGAGA 1 41.64
AAAAAATAAC 1 41.64
AAAAAATCCC 1 41.64
AAAAAATTCT 1 41.64
AAAAACACCC 1 41.64
AAAAACAGTA 1 41.64
AAAAACCATA 1 41.64
AAAAACCCAA 1 41.64
AAAAACCCTT 1 41.64
AAAAACTCTA 1 41.64
AAAAACTGGT 1 41.64
AAAAAGAAAA 1 41.64
AAAAAGATAA 1 41.64

Total number of rows: 10115

Table truncated, full table size 189 Kbytes.




Supplementary data files not provided

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