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Sample GSM383788 Query DataSets for GSM383788
Status Public on Mar 20, 2009
Title SAGE_Breast_carcinoma_associated_stroma_B_IDC7
Sample type SAGE
Anchor NlaIII
Tag Count 68024
Tag Length 10
 
Source name breast, stroma, tumor associated, bulk, extracted short sage, adult, female
Organism Homo sapiens
Characteristics organ/tissue: mammary gland
tissue preparation: bulk
age: 47
sex: female
cell type: invasive breast cancer ER+, PR+, Her2-, grade II
Biomaterial provider Andrea Richardson, M.D., Ph.D.
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 419
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, M.D., Ph.D.
Laboratory: Polyak lab, Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 238 3498.77
AAAAAAAAAG 2 29.40
AAAAAAAAAT 1 14.70
AAAAAAAACT 1 14.70
AAAAAAAAGA 3 44.10
AAAAAAAATG 1 14.70
AAAAAAACAA 1 14.70
AAAAAAACCC 1 14.70
AAAAAAACTC 1 14.70
AAAAAAACTT 1 14.70
AAAAAAAGAA 1 14.70
AAAAAAAGAG 1 14.70
AAAAAAATAA 2 29.40
AAAAAAATCA 6 88.20
AAAAAAATTT 3 44.10
AAAAAACAAA 1 14.70
AAAAAACATT 1 14.70
AAAAAACCCA 18 264.61
AAAAAACGCA 1 14.70
AAAAAACGGA 1 14.70

Total number of rows: 25038

Table truncated, full table size 466 Kbytes.




Supplementary data files not provided
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