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Status |
Public on Mar 20, 2009 |
Title |
SAGE_Breast_carcinoma_B_IDC-3 |
Sample type |
SAGE |
Anchor |
NlaIII
|
Tag Count |
68891 |
Tag Length |
10 |
|
|
Source name |
mammary gland, ductal, invasive, in situ, low grade, carcinoma, non-normalized, short SAGE, bulk
|
Organism |
Homo sapiens |
Characteristics |
organ/tissue: mammary gland tissue preparation: bulk sex: female cell type: breast invasive ductal carcinoma other information: Invasive ductal carcinoma with some in situ component, low-grade, ER-positive, erbB22-negative, lymph node-negative, p53-negative.
|
Biomaterial provider |
Andrea Richardson
|
Extracted molecule |
total RNA |
Extraction protocol |
N/A
|
|
|
Description |
CGAP_Numeric_library_ID: 173 Tagging_enzyme: BsmF I Library_producer: Kornelia Polyak Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute
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|
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Submission date |
Mar 19, 2009 |
Last update date |
Mar 20, 2009 |
Contact name |
Cancer Genome Anatomy Project CGAP |
E-mail(s) |
cgapbs-r@mail.nih.gov
|
Phone |
301-496-1550
|
URL |
http://cgap.nci.nih.gov/
|
Organization name |
National Cancer Institute
|
Department |
Cancer Genome Anatomy Project
|
Street address |
|
City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20852 |
Country |
USA |
|
|
Platform ID |
GPL4 |
Series (2) |
GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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Data table header descriptions |
TAG |
|
COUNT |
|
TPM |
tags per million |
Data table |
TAG |
COUNT |
TPM |
AAAAAAAAAA |
139 |
2017.68 |
AAAAAAAAAT |
1 |
14.52 |
AAAAAAAAGA |
6 |
87.09 |
AAAAAAAAGG |
1 |
14.52 |
AAAAAAAATA |
1 |
14.52 |
AAAAAAAATG |
1 |
14.52 |
AAAAAAACCC |
1 |
14.52 |
AAAAAAACTC |
1 |
14.52 |
AAAAAAAGAA |
1 |
14.52 |
AAAAAAAGGA |
1 |
14.52 |
AAAAAAAGGC |
1 |
14.52 |
AAAAAACAAA |
2 |
29.03 |
AAAAAACATT |
3 |
43.55 |
AAAAAACCCA |
42 |
609.66 |
AAAAAACCCC |
1 |
14.52 |
AAAAAACTCC |
3 |
43.55 |
AAAAAACTGA |
1 |
14.52 |
AAAAAAGAAA |
2 |
29.03 |
AAAAAATAAA |
2 |
29.03 |
AAAAAATACA |
1 |
14.52 |
Total number of rows: 22732
Table truncated, full table size 424 Kbytes.
Supplementary data files not provided |
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