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Status |
Public on Mar 20, 2009 |
Title |
SAGE_Breast_carcinoma_B_IDC-5 |
Sample type |
SAGE |
Anchor |
NlaIII
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Tag Count |
60451 |
Tag Length |
10 |
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Source name |
mammary gland, ductal, invasive, low grade, carcinoma, non-normalized, short SAGE, bulk
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Organism |
Homo sapiens |
Characteristics |
organ/tissue: mammary gland tissue preparation: bulk sex: female cell type: breast carcinoma other information: Breast, invasive ductal carcinoma, low-grade, ERpos, erbB2neg., lymph node neg., p53neg.
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Extracted molecule |
total RNA |
Extraction protocol |
N/A
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Description |
CGAP_Numeric_library_ID: 175 Tagging_enzyme: BsmF I Library_producer: Kornelia Polyak Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute
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Submission date |
Mar 19, 2009 |
Last update date |
Mar 20, 2009 |
Contact name |
Cancer Genome Anatomy Project CGAP |
E-mail(s) |
cgapbs-r@mail.nih.gov
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Phone |
301-496-1550
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URL |
http://cgap.nci.nih.gov/
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Organization name |
National Cancer Institute
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Department |
Cancer Genome Anatomy Project
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Street address |
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City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20852 |
Country |
USA |
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Platform ID |
GPL4 |
Series (2) |
GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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Data table header descriptions |
TAG |
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COUNT |
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TPM |
tags per million |
Data table |
TAG |
COUNT |
TPM |
AAAAAAAAAA |
243 |
4019.78 |
AAAAAAAAAC |
2 |
33.08 |
AAAAAAAAAG |
3 |
49.63 |
AAAAAAAAAT |
1 |
16.54 |
AAAAAAAAGA |
2 |
33.08 |
AAAAAAAATA |
1 |
16.54 |
AAAAAAAATG |
1 |
16.54 |
AAAAAAACCC |
1 |
16.54 |
AAAAAAAGAA |
1 |
16.54 |
AAAAAAAGCA |
3 |
49.63 |
AAAAAAAGCT |
1 |
16.54 |
AAAAAAAGGG |
1 |
16.54 |
AAAAAAAGGT |
1 |
16.54 |
AAAAAAATCA |
1 |
16.54 |
AAAAAACCCA |
35 |
578.98 |
AAAAAACGGT |
1 |
16.54 |
AAAAAACTAC |
1 |
16.54 |
AAAAAACTCC |
1 |
16.54 |
AAAAAACTGA |
1 |
16.54 |
AAAAAACTGG |
1 |
16.54 |
Total number of rows: 20457
Table truncated, full table size 381 Kbytes.
Supplementary data files not provided |
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