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Status |
Public on Mar 20, 2009 |
Title |
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS-3 |
Sample type |
SAGE |
Anchor |
NlaIII
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Tag Count |
57402 |
Tag Length |
10 |
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Source name |
mammary gland, epithelium, ductal, in situ, carcinoma, antibody purified, non-normalized, short sage
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Organism |
Homo sapiens |
Characteristics |
organ/tissue: mammary gland tissue preparation: antibody purified age: 41 sex: female cell type: carcinoma other information: Breast, ductal carcinoma in situ, high-grade, comedo, Ber-EP4 purified cells. Library name in Cancer Cell, 2004, 6(1):17-32 "D-EPI-3 epithelial cells"
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Biomaterial provider |
Andrea Richardson
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Extracted molecule |
total RNA |
Extraction protocol |
N/A
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Description |
CGAP_Numeric_library_ID: 187 Tagging_enzyme: BsmF I Library_producer: Kornelia Polyak Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute
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Submission date |
Mar 19, 2009 |
Last update date |
Mar 20, 2009 |
Contact name |
Cancer Genome Anatomy Project CGAP |
E-mail(s) |
cgapbs-r@mail.nih.gov
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Phone |
301-496-1550
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URL |
http://cgap.nci.nih.gov/
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Organization name |
National Cancer Institute
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Department |
Cancer Genome Anatomy Project
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Street address |
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City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20852 |
Country |
USA |
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Platform ID |
GPL4 |
Series (2) |
GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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Data table header descriptions |
TAG |
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COUNT |
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TPM |
tags per million |
Data table |
TAG |
COUNT |
TPM |
AAAAAAAAAA |
22 |
383.26 |
AAAAAAAAAC |
2 |
34.84 |
AAAAAAAAAG |
1 |
17.42 |
AAAAAAAAAT |
3 |
52.26 |
AAAAAAAATG |
4 |
69.68 |
AAAAAAACCC |
2 |
34.84 |
AAAAAAACTC |
1 |
17.42 |
AAAAAAAGCC |
2 |
34.84 |
AAAAAAAGCT |
2 |
34.84 |
AAAAAAAGTA |
1 |
17.42 |
AAAAAAAGTG |
1 |
17.42 |
AAAAAAAGTT |
2 |
34.84 |
AAAAAAATAA |
2 |
34.84 |
AAAAAAATCA |
2 |
34.84 |
AAAAAAATGA |
1 |
17.42 |
AAAAAAATGC |
1 |
17.42 |
AAAAAAATTA |
1 |
17.42 |
AAAAAAATTC |
1 |
17.42 |
AAAAAAATTT |
2 |
34.84 |
AAAAAACAAG |
1 |
17.42 |
Total number of rows: 31142
Table truncated, full table size 579 Kbytes.
Supplementary data files not provided |
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