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Sample GSM383816

Query DataSets for GSM383816

Status

Public on Mar 20, 2009

Title

SAGE_Breast_carcinoma_epithelium_CD24+_AP_PE2

Sample type

SAGE

Anchor

NlaIII

Tag Count

50132

Tag Length

Source name

human, breast/mammary gland, antibody purified, cancer, pleural effusion, her2-, recurrence of er+ tumor, female, extracted short sage

Organism

Homo sapiens

Characteristics

organ/tissue: mammary gland
tissue preparation: antibody purified
age: unknown
sex: female
cell type: Pleural effusion, HER2-, recurrence of ER+ tumor
other information: cells purified using CD24 antibody, these cells are CD24+ more differentiated breast cancer cells

Biomaterial provider

Andrea Richardson, MD,PhD, BWH

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 2174
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD, DFCI
Laboratory: Polyak Lab, DFCI
References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	5	99.74
AAAAAAAAGG	2	39.89
AAAAAAAATC	1	19.95
AAAAAAAATG	1	19.95
AAAAAAATGG	1	19.95
AAAAAAATTT	3	59.84
AAAAAACCCA	19	379.00
AAAAAACGAC	1	19.95
AAAAAACTCC	2	39.89
AAAAAAGGAG	2	39.89
AAAAAATAGA	1	19.95
AAAAAATAGC	1	19.95
AAAAAATCAG	1	19.95
AAAAAATCCC	1	19.95
AAAAAATGAA	4	79.79
AAAAAATGAC	1	19.95
AAAAAATTAG	1	19.95
AAAAAATTGT	1	19.95
AAAAAATTTT	1	19.95
AAAAACCATA	3	59.84

Total number of rows: 18214

Table truncated, full table size 339 Kbytes.

Supplementary data files not provided