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Status |
Public on Mar 20, 2009 |
Title |
SAGE_Breast_carcinoma_epithelium_PROCR+_AP_IDC28 |
Sample type |
SAGE |
Anchor |
NlaIII
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Tag Count |
52781 |
Tag Length |
10 |
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Source name |
human, breast/mammary gland, antibody purified, cancer, invasive ductal carcinoma er+,pr+,her2-, female, adult, extracted short sage
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Organism |
Homo sapiens |
Characteristics |
organ/tissue: mammary gland tissue preparation: antibody purified age: 50 sex: female cell type: Invasive ductal carcinoma, high-grade, ER+,PR+,HER2- other information: cells purified using PROCR antibody, these cells are CD44+ breast "cancer stem" cells
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Biomaterial provider |
Andrea Richardson, MD,PhD, BWH
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Extracted molecule |
total RNA |
Extraction protocol |
N/A
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Description |
CGAP_Numeric_library_ID: 2167 Tagging_enzyme: Mme I Library_producer: Michail Shipitsin, PhD, DFCI Laboratory: Polyak Lab, DFCI References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]
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Submission date |
Mar 19, 2009 |
Last update date |
Mar 20, 2009 |
Contact name |
Cancer Genome Anatomy Project CGAP |
E-mail(s) |
cgapbs-r@mail.nih.gov
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Phone |
301-496-1550
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URL |
http://cgap.nci.nih.gov/
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Organization name |
National Cancer Institute
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Department |
Cancer Genome Anatomy Project
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Street address |
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City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20852 |
Country |
USA |
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Platform ID |
GPL4 |
Series (2) |
GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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Data table header descriptions |
TAG |
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COUNT |
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TPM |
tags per million |
Data table |
TAG |
COUNT |
TPM |
AAAAAAAAAA |
8 |
151.57 |
AAAAAAAAAT |
1 |
18.95 |
AAAAAAAAGA |
1 |
18.95 |
AAAAAAAAGG |
1 |
18.95 |
AAAAAAAATA |
1 |
18.95 |
AAAAAAAATT |
1 |
18.95 |
AAAAAAACAA |
1 |
18.95 |
AAAAAAAGTA |
1 |
18.95 |
AAAAAAATCA |
1 |
18.95 |
AAAAAAATTT |
3 |
56.84 |
AAAAAACAAA |
1 |
18.95 |
AAAAAACCCC |
1 |
18.95 |
AAAAAACTCC |
1 |
18.95 |
AAAAAAGGAG |
2 |
37.89 |
AAAAAAGTAA |
1 |
18.95 |
AAAAAATAAA |
1 |
18.95 |
AAAAAATCCA |
1 |
18.95 |
AAAAAATCGA |
2 |
37.89 |
AAAAAATTGG |
1 |
18.95 |
AAAAAATTTG |
2 |
37.89 |
Total number of rows: 19555
Table truncated, full table size 365 Kbytes.
Supplementary data files not provided |
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