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Sample GSM383822 Query DataSets for GSM383822
Status Public on Mar 20, 2009
Title SAGE_Breast_carcinoma_MD_DCIS
Sample type SAGE
Anchor NlaIII
Tag Count 40783
Tag Length 10
 
Source name mammary gland, epithelium, ductal, in situ, carcinoma, microscope dissected, non-normalized, short SAGE
Organism Homo sapiens
Characteristics organ/tissue: mammary gland
tissue preparation: microscope dissected
age: 67
sex: female
cell type: ductal carcinoma in situ
other information: Breast, macroscopically dissected (>90% pure) high grade, comedo DCIS (ductal carcinoma in situ) of the breast obtained from a 67 year old female patient undergoing partial mastectomy. The tumor cells are estrogen and progesteron receptor positive
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 32
Tagging_enzyme: BsmF I
Old_library_name: SAGE_DCIS
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute
References: I. E. Krop et al., Proc Natl Acad Sci U S A 98, 9796-9801 (2001) [PUBMED=11481438]|D. A. Porter et al., Cancer Res 61, 5697-702 (2001) [PUBMED=11479200]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 102 2501.04
AAAAAAAAAT 3 73.56
AAAAAAAAGA 1 24.52
AAAAAAAATT 1 24.52
AAAAAAACAA 1 24.52
AAAAAAACCC 2 49.04
AAAAAAAGAA 1 24.52
AAAAAAAGCA 1 24.52
AAAAAAAGGA 1 24.52
AAAAAAATCA 3 73.56
AAAAAAATTT 1 24.52
AAAAAACCCA 54 1324.08
AAAAAACCCC 1 24.52
AAAAAACCCG 1 24.52
AAAAAACCTA 1 24.52
AAAAAACTAC 1 24.52
AAAAAACTCC 10 245.20
AAAAAACTTA 3 73.56
AAAAAAGGGG 1 24.52
AAAAAAGTCT 1 24.52

Total number of rows: 14237

Table truncated, full table size 266 Kbytes.




Supplementary data files not provided

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