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Status |
Public on Mar 20, 2009 |
Title |
SAGE_Breast_normal_epithelium_CD44+_AP_N2 |
Sample type |
SAGE |
Anchor |
NlaIII
|
Tag Count |
56008 |
Tag Length |
10 |
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|
Source name |
human, breast/mammary gland, antibody purified, normal, normal breast tissue reduction, adult, female, extracted short sage
|
Organism |
Homo sapiens |
Characteristics |
organ/tissue: mammary gland tissue preparation: antibody purified age: 22 sex: female cell type: Normal breast tissue reduction other information: cells purified using CD44 antibody, these cells are CD44+ mammary epithelial stem cells
|
Biomaterial provider |
Andrea Richardson, MD,PhD, BWH
|
Extracted molecule |
total RNA |
Extraction protocol |
N/A
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|
|
Description |
CGAP_Numeric_library_ID: 2180 Tagging_enzyme: Mme I Library_producer: Michail Shipitsin, PhD, DFCI Laboratory: Polyak Lab, DFCI References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]
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Submission date |
Mar 19, 2009 |
Last update date |
Mar 20, 2009 |
Contact name |
Cancer Genome Anatomy Project CGAP |
E-mail(s) |
cgapbs-r@mail.nih.gov
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Phone |
301-496-1550
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URL |
http://cgap.nci.nih.gov/
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Organization name |
National Cancer Institute
|
Department |
Cancer Genome Anatomy Project
|
Street address |
|
City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20852 |
Country |
USA |
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|
Platform ID |
GPL4 |
Series (2) |
GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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Data table header descriptions |
TAG |
|
COUNT |
|
TPM |
tags per million |
Data table |
TAG |
COUNT |
TPM |
AAAAAAAAAA |
5 |
89.27 |
AAAAAAAAAT |
1 |
17.85 |
AAAAAAAACC |
1 |
17.85 |
AAAAAAAAGG |
1 |
17.85 |
AAAAAAACTA |
1 |
17.85 |
AAAAAAACTG |
1 |
17.85 |
AAAAAAAGGA |
1 |
17.85 |
AAAAAAAGTA |
1 |
17.85 |
AAAAAAATCA |
1 |
17.85 |
AAAAAAATTT |
10 |
178.55 |
AAAAAACTAC |
1 |
17.85 |
AAAAAACTCC |
2 |
35.71 |
AAAAAAGGAG |
2 |
35.71 |
AAAAAAGTTA |
1 |
17.85 |
AAAAAATAAA |
1 |
17.85 |
AAAAAATAAT |
1 |
17.85 |
AAAAAATGGT |
1 |
17.85 |
AAAAAATTAA |
1 |
17.85 |
AAAAAATTTG |
6 |
107.13 |
AAAAACAACT |
1 |
17.85 |
Total number of rows: 21171
Table truncated, full table size 394 Kbytes.
Supplementary data files not provided |
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