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| Status |
Public on Mar 20, 2009 |
| Title |
SAGE_Breast_normal_myoepithelium_CL_HME50 |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
55516 |
| Tag Length |
10 |
| |
|
| Source name |
human, breast/mammary gland, cell line, normal, spontenously immortalized mammary myoepithelial cell line from li-fraumeni patient, female, li-fraumeni patient (heterozygous tp53 mutation), short extracted sage
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| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: mammary gland
tissue preparation: cell line
sex: female
cell type: spontenously immortalized mammary myoepithelial cell line from Li-Fraumeni patient
mutations: Li-Fraumeni patient (heterozygous TP53 mutation)
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| Biomaterial provider |
Jerry Shay, UT Southwestern, Dallas, TX
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| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
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| |
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| Description |
CGAP_Numeric_library_ID: 2348
Tagging_enzyme: Mme I
Library_producer: Min Hu, PhD
Laboratory: Polyak Lab, Dana-Farber Cancer Institute, Boston, MA
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
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| Phone |
301-496-1550
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| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
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| Department |
Cancer Genome Anatomy Project
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| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
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| Platform ID |
GPL4 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
163 |
2936.09 |
| AAAAAAAAAG |
3 |
54.04 |
| AAAAAAAAAT |
1 |
18.01 |
| AAAAAAAACT |
2 |
36.03 |
| AAAAAAAATG |
1 |
18.01 |
| AAAAAAACTC |
1 |
18.01 |
| AAAAAAAGAA |
2 |
36.03 |
| AAAAAAATAA |
2 |
36.03 |
| AAAAAAATTT |
1 |
18.01 |
| AAAAAACATT |
1 |
18.01 |
| AAAAAACCCA |
11 |
198.14 |
| AAAAAACTCC |
3 |
54.04 |
| AAAAAACTTA |
1 |
18.01 |
| AAAAAAGAAA |
1 |
18.01 |
| AAAAAAGATT |
1 |
18.01 |
| AAAAAATAAA |
2 |
36.03 |
| AAAAAATGAA |
2 |
36.03 |
| AAAAAATGCT |
1 |
18.01 |
| AAAAAATGGT |
2 |
36.03 |
| AAAAAATTGA |
1 |
18.01 |
Total number of rows: 18205
Table truncated, full table size 340 Kbytes.
| Supplementary data files not provided |
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