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Sample GSM383864 Query DataSets for GSM383864
Status Public on Mar 20, 2009
Title SAGE_Colon_adenocarcinoma_CL_SW837
Sample type SAGE
Anchor NlaIII
Tag Count 61148
Tag Length 10
 
Source name adenocarcinoma, colon, non-normalized, short SAGE, cell line
Organism Homo sapiens
Characteristics organ/tissue: colon
tissue preparation: cell line
cell type: adenocarcinoma
mutations: RER- with mutant p53 (248arg-trp) mutant APC
other information: Colon, cancer cell line. Mismatch proficient(RER-) with a mutant p53(248arg -> trp) and a mutant APC.
Biomaterial provider ATCC
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 5
Tagging_enzyme: BsmF I
Old_library_name: SAGE_SW837
Library_producer: Lin Zhang
Laboratory: Ken Kinzler and Bert Vogelstein, Johns Hopkins Medical Institute
References: L. Zhang et al., Science 276, 1268-1272 (1997) [PUBMED=9157888]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 216 3532.41
AAAAAAAAAC 2 32.71
AAAAAAAAAG 5 81.77
AAAAAAAAAT 2 32.71
AAAAAAAAGA 1 16.35
AAAAAAAAGG 1 16.35
AAAAAAAATG 1 16.35
AAAAAAACTA 2 32.71
AAAAAAATCA 2 32.71
AAAAAAATTT 3 49.06
AAAAAACAAA 1 16.35
AAAAAACAGA 1 16.35
AAAAAACATT 1 16.35
AAAAAACCCA 5 81.77
AAAAAACTCC 3 49.06
AAAAAAGAAA 2 32.71
AAAAAAGCAG 1 16.35
AAAAAAGTTA 1 16.35
AAAAAATAAA 1 16.35
AAAAAATCAT 1 16.35

Total number of rows: 20756

Table truncated, full table size 387 Kbytes.




Supplementary data files not provided

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