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Status
Public on Mar 20, 2009
Title
SAGE_Colon_normal_B_NC2
Sample type
SAGE
Anchor
NlaIII
Tag Count
48479
Tag Length
10
Source name
epithelium, normal, colon, non-normalized, short SAGE, bulk
Organism
Homo sapiens
Characteristics
organ/tissue: colon tissue preparation: bulk cell type: normal epithelium other information: Normal colonic epithelium
Biomaterial provider
Vogelstein/Kinzler
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 12 Tagging_enzyme: BsmF I Old_library_name: SAGE_NC2 Library_producer: Lin Zhang Laboratory: Ken Kinzler and Bert Vogelstein, Johns Hopkins Medical Institute
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL4
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309
Cancer Genome Anatomy Project (CGAP) Human SAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
39
804.47
AAAAAAAAAG
3
61.88
AAAAAAAGCA
1
20.63
AAAAAAATCA
1
20.63
AAAAAACCCA
2
41.25
AAAAAACCTA
1
20.63
AAAAAAGACG
1
20.63
AAAAAATGTT
1
20.63
AAAAACACCT
1
20.63
AAAAACATCT
1
20.63
AAAAACTTAG
2
41.25
AAAAAGAACG
1
20.63
AAAAAGCAAA
1
20.63
AAAAAGCAGA
1
20.63
AAAAAGCCCC
1
20.63
AAAAAGCTCA
1
20.63
AAAAAGCTCC
1
20.63
AAAAAGCTGA
5
103.14
AAAAAGGGTT
1
20.63
AAAAAGTGCT
1
20.63
Total number of rows: 16270 Table truncated, full table size 303 Kbytes .Supplementary data files not provided