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Sample GSM383881 Query DataSets for GSM383881
Status Public on Mar 20, 2009
Title SAGE_Embryonic_stem_cell_HES4_normal_p36_CL_SHE11
Sample type SAGE
Anchor NlaIII
Tag Count 209232
Tag Length 10
 
Source name embryonic stem cell, normal, cell line, extracted short sage, male, hes4, es04, mef
Organism Homo sapiens
Characteristics organ/tissue: stem cell
tissue preparation: cell line
age: p36
sex: male
Biomaterial provider Martin Pera
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 1384
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 118 563.97
AAAAAAAAAG 2 9.56
AAAAAAAAAT 7 33.46
AAAAAAAACA 1 4.78
AAAAAAAACC 1 4.78
AAAAAAAACT 5 23.90
AAAAAAAAGA 6 28.68
AAAAAAAAGG 3 14.34
AAAAAAAATA 1 4.78
AAAAAAAATC 6 28.68
AAAAAAAATG 6 28.68
AAAAAAAATT 3 14.34
AAAAAAACAG 2 9.56
AAAAAAACCA 1 4.78
AAAAAAACCC 1 4.78
AAAAAAACTC 4 19.12
AAAAAAACTT 1 4.78
AAAAAAAGAA 2 9.56
AAAAAAAGCA 1 4.78
AAAAAAAGGG 1 4.78

Total number of rows: 48494

Table truncated, full table size 867 Kbytes.




Supplementary data files not provided

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